Basic Information

Gene Symbol
ARID5B
Assembly
None
Location
chr1:67676068-67707283[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.9e-25 1.4e-21 77.1 0.0 2 89 313 397 312 397 0.94

Sequence Information

Coding Sequence
ATGGATAGAAAGGTTAAGTTTATCGGTGCTTCGTGTGGACAGCATGGACCTTATACTTTTTACAAAGCTTTCAAATATAGAAAGCATGGTGTGAATAGAATTGTGACTTTGGGTGAATTTTTTTTTGTGAAACTGTGGATCGACTCGGATTTATTGTGTATCGGTGAACTACAGTTGTTATGGATTGATAAGAACAGTGAACAAGTTTTGGCAAGCCTCAGACTGTATTTTCTGCCAGAAAATACACCTGAAGGGCGCATGGATCACGGTGAGGATGAAGTGTTGGCGATAGCAGAAAAAGTTGTACTGAGAGTCGAGGATCTGGTAACGTGGATAACCGTAGATGCAGAATGGACGTGGGGAAGATTGGGAAAAAGCTGCAAACAGATCAAAGAACCACCTGACGGAGGAGCGCAAGAAGTTGGTCCAGTTTCTCTTTCCGAAAGTTCCTTGGATTTCTCAGATGTGGAGAAGGAGAAGCAAATTTTAAAAAACGAATCTGACGATGATCTCGGACCGTCCGTGGTGATCCTTAGTTACCCCAAATACTGCCGGTACAGGGCGATGATGAAACGTTTGGAGGGCGTAGAAGACGAGTTCCTGAAATACAACATCGTAAAGGCCCTGGGCGGCTTTTCCTTCGGTGCAGAAAACACCAGGGTGATGTTCTGCAAGGACACCTTCGAATATCCGGACTTGGAGGGCCACGAATTGCTGTGCAATCACCTTGCTCCTAAGCTGAAAGGACGTCCTAGGGGCAAGCGGAAAAAGAGGAGCGTTTCGCCAGGATCCGAGAGCAACGAGTCAGAATGTTCGGTGGTGACGTCTTTCACCGCCAAGTCTAAACTTTCTTCCGAGCCAGGTCATAATAAAAATGGATACTGTTTGGAGGCTTCCGCACCTAGAAGAAGTACAAGATCGTCAGATAATAGTGAATCGAAAGAATTCTTAAAGAAACTCACTGCATTCATGAAGATGAAAAGAACCCCTCTTGGTCGAACACCTTGTTTGGGATCTAAAGAGATTGATCTCCACGACTTCTACACAAAAGTACAAAAAATGGGAGGGTATGACTCGGTAACATCAAATCGTATTTGGAAAAATATATCGGATGATATGAGTGGTCAGCAAAACTCCAGTGCAGCTACAGTTATCAAGAGACACTATGAAAGGTTTTTACTGCCTTATGAACGTCATATTAGAGGAGAAGAATACAAACCGTTACCGGTTTCTGAAAGAAGAAGACTGAAATCAAAATCTGCCAACAACGCAACACGATCTGAAGTTGATGATGAAACAGATAGAGATGTTCCACTTTGCTCGACGTCCAACGATAAATCGCCTTCACCAAAGTCAACAGTCTCTCAGAATTCTAAAGAAACCATTGGAAATTCTAAGCAAGAACCGAAAATATCGTCTTTGAGAAGTGTTAGAGTGAAACCAGAACGCCAGAAAGATAAGTTCGCTAAAGTGGTTAAAATGGAAGAAATAAACTCTGATAAAGAAATTCAAGACGTGATAAAACTCGAAAATAGGTCATCAACAGTTATAACAAATATAGCGAAAGAAGAATGTAAAGAAGAAGAAAAACTATCAGTGAAAATTGAAAATTCTACAATCGATGAAAAACCTTCTACACAACTTGACGATTCATCGACTGTAGAATACAAAGAAAACGATATTTCAAATGAGATAAAAGATTGTTGTAAAAATAAAGATTTAGTTATAGAGCCATGCAATTCGACATCTCCAGATGAGAATGATCAAAAAGTACCAAGTCTGGAAGACATAAAACAAGAGTCGTCCCGTCTCATAGATGAACTGAGAAAAGAAAAATTAGACATTTTGAAAGAAGGTGGTTTGGAAGTAACACCTGTCTGTTCTGTTTCTAACACTATTACAAATAATGATGTGAAAGATCCATTTATTCCTTCGACACCAGTACACACATCGAAATCTTCAAGAAAGGACACTCGGCAAATTTCTACACAGGGTGTACCGGTGAAACATTTATCAATAAATGTACCTCAGTCATTAAATATCAGTAAAGTTACAGTACCATCAGCTACAAAAAATACTAGTAAACTATTAAATGTATATCCTTTCCCAGAGAAGACAGACTCAACAACACCTCCCAAGGTTGTTCAATCCAAGTCCATTTATTCTTATTCTGAAAAAACTGTTTATGGAAATCCAAAAGACTTTTTATTAAATAGTTACACTGTACATACTCCAAAAGCTCCTGTGAATTTGATGAAACCGACTGGAGGAGATCTCCTCGATTTGACTGTGGCTAGTCCTCAGAAACCTTTCTTCGATACTAGAATTCCTAGTGTTCCTTCGACTGCTACGTCATCTTTCAACTTCAACACGTCTAAAAATGTTGTGAAAGCTGCCAATTTGCCGATTTTCGAGGGTAGAAAATTAGGATCAAACCTGGAAATCACCCTCGTTGACTCAAAAGATAAGGTACCTTCCTCATTTTCAAGAGAACCAGACACGTCCTCTAGACTGAAAAATACAGATTATTCCTTATACCAAATCCCAAATAAACAAATTGGTATGGAAAATTCAAATAGTTACAAAATCAAAAAATGCAATGAGAACGGTGATTATATAAAACCATCAACGTCTTCTGGCAACAATCGAAATAAGAGATGCAGAGAGGAAAATAATCAAACCAATCATACTTCTTCAACTAATAAACGTCCCAGTATGAAAGTGGAAAGTAATAATACTGCCTATAAGGCCAGTGCAGAAACTGCCTCAGCTGCAAAGTACTTTCCGCAAGGGGTCCAATTTCCTCATTACTTGTCGCAATTTTACGAAAGTAATAAGGGAGTGAATCCATATTTCCCCATGATTGATCCTCTCTTGTATTCGGCAGCATTGCAAAGTTTGTATCCGCAGACTAGTTCGCCACTTCTCCAATTCACATCTCAAGAACAGCTGAAATTATATACAGAATTGATGGCGCAACAGTCTAGGGCTCCTTACCCCTTCATGCTACCAACAGATGAAGAATTTTCCAATAACAATAAGAAGTAA
Protein Sequence
MDRKVKFIGASCGQHGPYTFYKAFKYRKHGVNRIVTLGEFFFVKLWIDSDLLCIGELQLLWIDKNSEQVLASLRLYFLPENTPEGRMDHGEDEVLAIAEKVVLRVEDLVTWITVDAEWTWGRLGKSCKQIKEPPDGGAQEVGPVSLSESSLDFSDVEKEKQILKNESDDDLGPSVVILSYPKYCRYRAMMKRLEGVEDEFLKYNIVKALGGFSFGAENTRVMFCKDTFEYPDLEGHELLCNHLAPKLKGRPRGKRKKRSVSPGSESNESECSVVTSFTAKSKLSSEPGHNKNGYCLEASAPRRSTRSSDNSESKEFLKKLTAFMKMKRTPLGRTPCLGSKEIDLHDFYTKVQKMGGYDSVTSNRIWKNISDDMSGQQNSSAATVIKRHYERFLLPYERHIRGEEYKPLPVSERRRLKSKSANNATRSEVDDETDRDVPLCSTSNDKSPSPKSTVSQNSKETIGNSKQEPKISSLRSVRVKPERQKDKFAKVVKMEEINSDKEIQDVIKLENRSSTVITNIAKEECKEEEKLSVKIENSTIDEKPSTQLDDSSTVEYKENDISNEIKDCCKNKDLVIEPCNSTSPDENDQKVPSLEDIKQESSRLIDELRKEKLDILKEGGLEVTPVCSVSNTITNNDVKDPFIPSTPVHTSKSSRKDTRQISTQGVPVKHLSINVPQSLNISKVTVPSATKNTSKLLNVYPFPEKTDSTTPPKVVQSKSIYSYSEKTVYGNPKDFLLNSYTVHTPKAPVNLMKPTGGDLLDLTVASPQKPFFDTRIPSVPSTATSSFNFNTSKNVVKAANLPIFEGRKLGSNLEITLVDSKDKVPSSFSREPDTSSRLKNTDYSLYQIPNKQIGMENSNSYKIKKCNENGDYIKPSTSSGNNRNKRCREENNQTNHTSSTNKRPSMKVESNNTAYKASAETASAAKYFPQGVQFPHYLSQFYESNKGVNPYFPMIDPLLYSAALQSLYPQTSSPLLQFTSQEQLKLYTELMAQQSRAPYPFMLPTDEEFSNNNKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00130267;
90% Identity
-
80% Identity
-