Basic Information

Insect: Halyomorpha halys
Gene Symbol: RREB1
Assembly: GCA_000696795.2
Location: NW:576621-613387[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.033 1.3 9.1 0.4 1 23 116 138 116 138 0.97

2 9 0.2 7.9 6.7 1.1 2 21 145 164 144 166 0.94

3 9 0.0009 0.036 14.0 3.3 1 23 172 195 172 195 0.97

4 9 0.01 0.41 10.7 1.0 3 23 271 292 269 292 0.95

5 9 9e-05 0.0036 17.2 0.4 2 23 392 413 391 413 0.97

6 9 0.0094 0.38 10.8 5.3 1 23 419 442 419 442 0.97

7 9 0.012 0.46 10.5 2.3 1 23 468 491 468 491 0.95

8 9 0.00093 0.037 14.0 0.3 2 23 527 548 526 548 0.96

9 9 0.005 0.2 11.7 6.1 1 23 554 576 554 576 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.033	1.3	9.1	0.4	1	23	116	138	116	138	0.97
2	9	0.2	7.9	6.7	1.1	2	21	145	164	144	166	0.94
3	9	0.0009	0.036	14.0	3.3	1	23	172	195	172	195	0.97
4	9	0.01	0.41	10.7	1.0	3	23	271	292	269	292	0.95
5	9	9e-05	0.0036	17.2	0.4	2	23	392	413	391	413	0.97
6	9	0.0094	0.38	10.8	5.3	1	23	419	442	419	442	0.97
7	9	0.012	0.46	10.5	2.3	1	23	468	491	468	491	0.95
8	9	0.00093	0.037	14.0	0.3	2	23	527	548	526	548	0.96
9	9	0.005	0.2	11.7	6.1	1	23	554	576	554	576	0.98

Sequence Information

Coding Sequence: ATGCAGGACGTAAAGACTTTTAGACCAGCTATGCCGCCATCTCCAGCTCCTGAagATTTGTCGTCAAGTATGATCTCCCGAAGTCCAGGGTCCACAGAAGACAGCGATTCAGACgAGGACAGATTCTGTAACGGATGTAATTCATTCTGTTCACCTGGGCACAGCTGTACAGGCAAAGATGAAGAACAGAATAATAACAACATCGATGGCTATTCTATGGCCGATCTTACCTCAAAAAACGAGTTCCTTGCTTGCCTCCACCTCAAGAAGTCGCCTGAGGTACGGGAAGATGAAGAACAAGATTGCTTCATTCAAGAATACAGAAGGATGAAACTTAAGGGGGAATTCCCATGCAGATTATGCAGgtcaaCATTTCCGAACCTTAGAGCTCTCAAGGGACATAACAGAGTTCATATGTCCTATGGAGTCCTTCAGTGTAATCTTTGCCCATATGCAGATACAGACAAAAATGGTCTTCTTcgGCACATGAGGTGTCACAATGGAGATAGACCTTACGAGTGTTCGCTTTGCAATTTTGCCTTTACAACTAAGGCTAATTGTGAAAGACATCTTCGCAACAGACATTCAGCAACAAAGACTGACCTAAGAGGTTGTATTATCCACCATGACGAATCTGAGAAGCGAGATGCTGGTACCATGACAGTAGAAGCACCATTGGATCTATCAACAAAAAGAACACCAGCAGAGCCTGTTCCATATCCATACCTAGACGTGAGGATGGTTGTCAAGAATGGTGTTCTAGTTCCTAAGCAGAAACAACGAAGATATAGgACGGAAAGACCATTTGGCTGTGAGTTCTGCACTGCTAGATTCACGTTACGATCCAATATGGAGCGTCATGTAAAGCAACAGCATCCACAATTCTATTCAGCAAGAAAAAGGAGGCCAAGAGAAGAAGACAGAATATCTGATAGTGTAAGAACTGCCTTGACAGGCCAGTTAAAGCGGCGAGAGGAGGATCTGAGAGACCTGGCAACAGTTTCACGGTTACTGGACAACGCTAGGGGgacttttcaacaattttttgggGACAAACAAGAAGTGAGCGATGAAGAAGGGCTGGTAGCTTCAGCCAGTGACAATAGCAGTGACGATAAATCTGAAccagaaaacaagaaaaagagCGCCTACTCATTAGCTCCTAATCGAGTATCCTGTCCCTACTGCTACAGAAAATTTCCCTGGTCTAGTTCACTCAGAAGACATATCCTCACACATACTGGACAAAAACCATTCAAATGTCCACATTGCCCTTTATTGTTTACGACTAAAAGCAATTGTGACAGGCACCTCTTAAGAAAACATGGGTCTGGTGACAGAGCAAAACGGCAGAAGCTAGAAACCGAACAAGAACATATGGTAGAAGggtcTGAAATGCCATTCAAGTGCCACCTGTGTGATACTTCTTTTGCAGAACGACAGGAAACCCTTTCTCATTTAAAAGAGAAACATGGGCCAGAATATGATTCTTTGGTATCCAAGGGTGCCTTGGAATCTAGTTGTGAAGATGAGGAAGATGATTCGAGACAAAGGGCAGACTATGCAAACCGTAAGGTGGTGTGTGCCTTCTGCCTTAGGAGGTTTTGGTCAGCTGAAGATCTTAGGAGACATATGCGAACTCATACTGGTGAAAGACCCTTTAGTTGCTCAGTCTGTTCAAGAAAGTTCACTCTTAAACATTCCATGCTTAGACATCGAAAAAAACATGACCAGCAAGAAGAACCTGAATCTGACCTCATAGGCAACCTCTTAGGGATACGAGACAAGTCTTTGGTGGACACAATGATTGAAAAAGGGCCCACAGACGCTGCTAAAATCCTTGGCTTGGAGAAGAATTCTACTTCGTGA
Protein Sequence: MQDVKTFRPAMPPSPAPEDLSSSMISRSPGSTEDSDSDEDRFCNGCNSFCSPGHSCTGKDEEQNNNNIDGYSMADLTSKNEFLACLHLKKSPEVREDEEQDCFIQEYRRMKLKGEFPCRLCRSTFPNLRALKGHNRVHMSYGVLQCNLCPYADTDKNGLLRHMRCHNGDRPYECSLCNFAFTTKANCERHLRNRHSATKTDLRGCIIHHDESEKRDAGTMTVEAPLDLSTKRTPAEPVPYPYLDVRMVVKNGVLVPKQKQRRYRTERPFGCEFCTARFTLRSNMERHVKQQHPQFYSARKRRPREEDRISDSVRTALTGQLKRREEDLRDLATVSRLLDNARGTFQQFFGDKQEVSDEEGLVASASDNSSDDKSEPENKKKSAYSLAPNRVSCPYCYRKFPWSSSLRRHILTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGSGDRAKRQKLETEQEHMVEGSEMPFKCHLCDTSFAERQETLSHLKEKHGPEYDSLVSKGALESSCEDEEDDSRQRADYANRKVVCAFCLRRFWSAEDLRRHMRTHTGERPFSCSVCSRKFTLKHSMLRHRKKHDQQEEPESDLIGNLLGIRDKSLVDTMIEKGPTDAAKILGLEKNSTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01298710;
90% Identity: iTF_00165643;
80% Identity: -