Hhal007619.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:103716-129985[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.024 0.97 9.5 3.0 1 23 226 249 226 249 0.96 2 17 0.0083 0.33 11.0 1.3 1 23 255 278 255 278 0.96 3 17 0.12 4.9 7.3 3.1 1 20 284 303 284 306 0.95 4 17 0.0043 0.17 11.9 5.6 1 20 313 332 313 336 0.96 5 17 0.0024 0.095 12.7 2.7 1 23 359 382 359 382 0.98 6 17 0.11 4.4 7.5 1.9 1 23 388 411 388 411 0.90 7 17 0.53 21 5.3 6.9 1 23 417 440 417 440 0.96 8 17 0.0073 0.29 11.2 3.5 1 23 446 469 446 469 0.97 9 17 0.0031 0.12 12.3 4.9 1 23 475 497 475 498 0.95 10 17 0.067 2.7 8.1 6.3 1 23 504 526 504 527 0.95 11 17 0.0082 0.33 11.0 1.2 3 23 535 556 534 556 0.95 12 17 0.0076 0.3 11.1 7.6 1 23 562 584 562 584 0.97 13 17 0.0037 0.15 12.1 3.3 1 23 591 614 591 614 0.98 14 17 0.19 7.7 6.7 8.6 1 23 620 643 620 643 0.97 15 17 0.00012 0.0046 16.8 1.2 1 23 649 672 649 672 0.95 16 17 0.0016 0.063 13.3 3.0 1 23 678 700 678 701 0.96 17 17 0.44 18 5.6 0.7 1 23 707 730 707 730 0.94
Sequence Information
- Coding Sequence
- ATGGCTGGACTAGATACGAGTAACTTGGATAGttctataaaagaagaaattatagatGAAATTGAGCCTACCGTCCCAACAAAGGATATGAAAGAAGAGGAAAGACTGGAGATTTACTATGGTGGCCTTGTTCATGTGAAACAGGAAGCGGAGTTACTTATTCCTAATGATGcaAGTGGATTAGATCATATGAAACCTGAAGAAAAGCTACTTGTTTCTGAAGATGGTACTCAAGACTCATTTGAAATGGATCACCAGAAAGAAAAGATGGATTTTAAAATACCTGTAAAAATTGCAGTAAAGGGTGGTTTTGACAAACATACGCTGACCTATCATACAGGTGGCCTTGTTCATGTGAAACAGGAAGGAGAGCTGCTTATTCCTGATGAAGGTATGAGTAACTTTGGTGTTTCTATTAAACAAGAAATTACGGATGAAATTGAGACAACTGaTCTGATTGCTATCAAAGAAGAGAAAGGGCCGAGTACTTATTGTGGTGGCCTTGTTCATGTGAAACAGGAAGGGGAGCTACTTGTTCCTGATGAAGataCCAAAGACTTGCTCAATGAGATAGATCACTGCAAAGGAAAGATGGATTTCAACATAACTGTAAAAACTGAAGCAGTAGACAGTTTAAACAAGCTTTTAATGTCCTGTCTTACTagtgaaaatttttatcaatgtcCACATTGTGTATATAAAACAGTACACAAGATTAGGTTAAAATCacatataatggcccgtcataTAGGTGAGAAGCCTTATCAATGTCATCTTTGTGAATATAAAGCAGTTTTGAAGAGTACtttaaaatcacatataatggcccgtcacACAGGCGAGAAGCCTCATCAGTGTCATCTTTGTGAATATAAAGCAGTACaaaaagttcatttaaaatcacatttatgGGAACATCATGCAAGTGAAAAGCCTTATCAATGTCATCACTGTGAATATAAAACAGTTAGAATGAGTAACTTGAAAAGGCATGTGACCtgtcatattaaaaaacataaagcagttaacaatttaaataaacatttaatgtcCTGCCTTACTAGTGAAAAACTTTATCAATGTTCTTATTGTGACCATAAagcaattacaatttttcatttggaacgACATATAATGTCCCTTCATACAGATGAGAAGCCTTATCAGTGTCAACACtgtgaatataaaacatttagactTGATAGTATAAAATCTCATATAGTGGCTCGTCATACAGGCAAGAAGCTTCATCAATGTTcacattgtgaatataaaactCATAGACTTGATAGattaaaatcacatataatCAGCCGTCATTCAATTGAAAAGCCTCATCAGTGTCCTCATTGTAAGTATAAAACAGCTCTAACtggctatttaaaaaaacatatacaggTCTCTCATACAGATAAGATGCCTTATGATTGTCCACACTGTAAATATCAAACAGTTTACCTAGgtcatttaaaattacatataatgacCCATCATTCTATTGAAAAGCCTCATAAATGttctcattgtgaatataaaacagCTAGACTCAGtagattaaaattacatataatcaaTCATCATTCAGTTGAAAAGCTTCGTccgtgtcctcattgtgaatttAAAACAGCTCgacttaatagtttaaaatcacatataaaGGCCCGACATTCAGGTGGAAAGCCTCATCAATGTTcacattgtgaatataaaacagTTCACTTAAGTCAtttaaaagttcatataaagGCCCATTTTTCTGTCAAAAAACTTCATCAGTGTCCACATTGTGAATATATAACTGTTAAAATTTCTCGTTTAAAACGACATATAATGACCCGTCATACAGACgaaaagcctcatcaatgtccacATTGTGGGCATAGAACCACTTgtcttagttatttaaaatcacaCATAATGAGGCAGCATCCCGTCGAAAAGCCTTATCTGTGCCCTCATTGTGAGTATAAAACGGCTGAccttagtaatttaaaatcacaCATAATGAAACAACACTCAGCCAAAAAGCCTTATCAGTGTCaacattgtgaatataaaacgGCTGTTCCTCGttatttaaaatcacatataatGGTTCATCACAAAGATAAGGAGCCTTTTCAATGTtatcattgtaattttaaagcaaTAAGTATTGGTCCTTTAAAATCACATATTATGGCCTATCATATAggcaaaagtataaaaaatgacctgtga
- Protein Sequence
- MAGLDTSNLDSSIKEEIIDEIEPTVPTKDMKEEERLEIYYGGLVHVKQEAELLIPNDASGLDHMKPEEKLLVSEDGTQDSFEMDHQKEKMDFKIPVKIAVKGGFDKHTLTYHTGGLVHVKQEGELLIPDEGMSNFGVSIKQEITDEIETTDLIAIKEEKGPSTYCGGLVHVKQEGELLVPDEDTKDLLNEIDHCKGKMDFNITVKTEAVDSLNKLLMSCLTSENFYQCPHCVYKTVHKIRLKSHIMARHIGEKPYQCHLCEYKAVLKSTLKSHIMARHTGEKPHQCHLCEYKAVQKVHLKSHLWEHHASEKPYQCHHCEYKTVRMSNLKRHVTCHIKKHKAVNNLNKHLMSCLTSEKLYQCSYCDHKAITIFHLERHIMSLHTDEKPYQCQHCEYKTFRLDSIKSHIVARHTGKKLHQCSHCEYKTHRLDRLKSHIISRHSIEKPHQCPHCKYKTALTGYLKKHIQVSHTDKMPYDCPHCKYQTVYLGHLKLHIMTHHSIEKPHKCSHCEYKTARLSRLKLHIINHHSVEKLRPCPHCEFKTARLNSLKSHIKARHSGGKPHQCSHCEYKTVHLSHLKVHIKAHFSVKKLHQCPHCEYITVKISRLKRHIMTRHTDEKPHQCPHCGHRTTCLSYLKSHIMRQHPVEKPYLCPHCEYKTADLSNLKSHIMKQHSAKKPYQCQHCEYKTAVPRYLKSHIMVHHKDKEPFQCYHCNFKAISIGPLKSHIMAYHIGKSIKNDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -