Hhal002465.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:28335-49274[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00021 0.0086 16.0 2.7 1 23 157 179 157 180 0.96 2 11 0.0062 0.25 11.4 0.7 5 23 190 208 188 209 0.93 3 11 0.001 0.04 13.9 4.4 1 23 216 239 216 239 0.98 4 11 0.00053 0.021 14.8 2.4 1 23 245 268 245 268 0.95 5 11 0.00048 0.019 14.9 0.1 1 23 274 297 274 297 0.96 6 11 0.06 2.4 8.3 0.8 1 23 303 325 303 326 0.95 7 11 0.00036 0.014 15.3 3.6 1 23 332 354 332 355 0.96 8 11 0.0004 0.016 15.1 2.3 1 23 361 384 361 384 0.94 9 11 0.00023 0.0091 15.9 3.3 1 23 390 413 390 413 0.97 10 11 3.4 1.4e+02 2.8 5.8 1 23 416 439 416 439 0.91 11 11 4.7 1.9e+02 2.3 1.9 1 23 445 468 445 468 0.77
Sequence Information
- Coding Sequence
- ATGGCTGAGGAAATTGAGTCTTCCTgcatAAATAACTTAAGTGGTTTTATAAAAGAAGAGATGGCTGAAGAAAATGAATCTTATTgtgcAAATGACTTAAGCATTTTTATAAAGGAAGAAATAACTAGTGATAATGAGTCTACTAGTATAAGGAACTTCAGTGGTATTATAAAAGAGGAAATGTCTGATGAAAATGGGTCTGCTTTCCTTTCTGATGGTATGAACAAAGAGGAAAAACAACAGATTTTTTATGGAGGACTTAGTCATATAAAACAAGAAGAAGAAGTCCTTGTTCCAGATGTTGgtaCAACGGATTCCTCAAACAAGATAATGAAAATCAATCCTTGTCATTTGACTACCAATATAAACATGGCATTAAAGGATCCAGCAcatctattactttttaaatctgTTACTTCTCaggaattaaaaactaatataaggGTCTTTCAAACTAGTAAAAAAGCTTATTACTGTTcatattgtgaatataaaacagaacaaagtgatagtttaaaaaatcatattgaatCACATCATACAGATAAGAAGCATCACCAATATTCTgaatgtgattataaatcagtaaattCTTCAGAATTAAAAACACATAGAATCACTCATCATACTGGTGAGAAGaaacctcatcaatgtcctcattgcagttttaaatttgtttatataacacTATTGAAAACACATATAATGACTTATCATACAGGTAAGaaacctcatcaatgtcctcattgcgATTATGAATCAGTTACTCTCCAAGAATTCAGAAAACATATGATGGCTAGCCACAAAGGTagaaatttttatcaatgtCCTCAATGTGATTATATATCATCGGTTTTATCAGGattgaaaatacatataatgGCACGTCATACAGATAAGAAGCCTTTTAAATGTCTGCagtgtgattataaatcagcatATGctgcaattttgaaaaaacatataatggctCATCATGAAGATGAAAAACCTTACCATTGCCCTcaatgtgattataaatcagtatatTCAACATCattgaaaatacatataatgactcatcatacaggtgagaaacctcatcaatgtcctcattgtgattacaAATCAGTAAATTCTTCAGTTTTGAAAAGACATGTAATGGCCCGCCATACAGGTGAAAAGCCTTATTGCTGTCCTAATTGTGAATATAAGGCGACACAAAAATCTTCATTAAGGAATCATATTAAGTCTAAGCATACGGGACatcagtgtcctcattgtgaatttaaagattttagtttaaaacattttaaacttcACATAATATCTGAACATAgaggtgaaaaatattttcaatgttctcAATGtgaatttaaatcatttcaCCGATTATCAATCAAAGAGCATGTAATGGCCTCTCATAATGTTTAA
- Protein Sequence
- MAEEIESSCINNLSGFIKEEMAEENESYCANDLSIFIKEEITSDNESTSIRNFSGIIKEEMSDENGSAFLSDGMNKEEKQQIFYGGLSHIKQEEEVLVPDVGTTDSSNKIMKINPCHLTTNINMALKDPAHLLLFKSVTSQELKTNIRVFQTSKKAYYCSYCEYKTEQSDSLKNHIESHHTDKKHHQYSECDYKSVNSSELKTHRITHHTGEKKPHQCPHCSFKFVYITLLKTHIMTYHTGKKPHQCPHCDYESVTLQEFRKHMMASHKGRNFYQCPQCDYISSVLSGLKIHIMARHTDKKPFKCLQCDYKSAYAAILKKHIMAHHEDEKPYHCPQCDYKSVYSTSLKIHIMTHHTGEKPHQCPHCDYKSVNSSVLKRHVMARHTGEKPYCCPNCEYKATQKSSLRNHIKSKHTGHQCPHCEFKDFSLKHFKLHIISEHRGEKYFQCSQCEFKSFHRLSIKEHVMASHNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -