Hhal000121.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:1815-25340[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.07 2.8 8.1 3.6 1 23 10 33 10 33 0.97 2 22 0.27 11 6.2 0.2 1 13 39 51 39 56 0.83 3 22 1.1 46 4.3 0.5 1 21 68 88 68 89 0.85 4 22 0.1 4.1 7.5 7.7 1 23 97 119 97 120 0.94 5 22 0.031 1.2 9.2 2.3 1 23 126 149 126 149 0.97 6 22 0.12 4.8 7.3 1.6 3 23 157 177 156 177 0.96 7 22 0.013 0.53 10.4 2.0 1 23 184 206 184 206 0.97 8 22 0.31 12 6.1 3.8 1 19 213 231 213 231 0.96 9 22 0.079 3.1 7.9 6.8 1 23 385 408 385 408 0.94 10 22 0.001 0.04 13.9 6.5 1 23 414 437 414 437 0.94 11 22 0.0029 0.11 12.5 1.7 1 23 443 466 443 466 0.94 12 22 0.025 1 9.5 3.3 1 23 472 495 472 495 0.94 13 22 0.0004 0.016 15.1 0.6 1 23 501 524 501 524 0.95 14 22 0.019 0.77 9.8 5.8 1 23 530 552 530 553 0.94 15 22 0.014 0.57 10.3 4.3 1 23 559 582 559 582 0.95 16 22 0.034 1.4 9.1 7.3 1 23 588 611 588 611 0.94 17 22 0.88 35 4.6 9.6 1 23 617 639 617 640 0.94 18 22 0.012 0.48 10.5 7.7 1 23 646 669 646 669 0.96 19 22 0.013 0.52 10.4 1.9 1 23 675 698 675 698 0.94 20 22 0.0013 0.051 13.6 4.8 1 23 704 727 704 727 0.95 21 22 0.15 6.1 7.0 10.1 1 23 733 755 733 756 0.94 22 22 0.00047 0.019 14.9 1.0 1 23 762 785 762 785 0.95
Sequence Information
- Coding Sequence
- atgCAACTTCATACAGATGAGAAGCcccatcaatgtcctcactgtgcccataaatttattacaactgagattttgaatatacatataatgaCCTACCACACAAGTGAGAACCCTCACCAATGTCCTCTATGTGaccataaatttattacaacccAGGTTTTGAAAAACAATGTAATGGTGAAACATTCAAATATGAAGCCTCACCACTGTCCTCATTGTGACTATGAATCTGTTAGTATTGTACGTATAAAAAGACATATTATGGCCTGTAATAGAGCTAATAAGCCTCATCACTGCCCTCACTGTGACCTTAAATGCATCAGAATTCGAGCTTTAAGAAACCATATTATGGCACACCATACAGATATGAAGCCTtatcaatgtcctcactgtgaccataattatattatacttttagaTTTGGTAACACATATTGCAACCTGTCATACTGGTGAGAAGTCTCGTAACTGCCCTTATTGTCTTTATAAATCAGCTCGATGTGGaaaaatgaaaagacacataatGGCCCATTATACTGgcgagaagcctcatcaatgctCTCACTGTGACTATAAATCTATTATACCTCAAGATTTGAAAAGGCATGAGTTGGTCCATCTGACAGACAAGAAGCCTCATCATTGTCTTCACTGTGGCCATAATTACACGACACTCCAAGATTTGATAAATCACTGTCCCTACTCCCATTGGTATTTTAAATCCGGTTTAAAAAACCACGTATTAGCTCAGCATACAGgtccAAATAATTTTGCTGTCTGTTTACCAAAAGAAATGACTGATGAAACTAATCATTCAcTTGCTACAATTAACATcaaaagagaagaagaagagCAGGAGCAGGAGATCTATTTTGGTGACCATGTTTATGTGAAAGAAGAACCACATTTCATTCTAGAGGAAGcAGGTGGGCTTACTCatgtaaaagaagaaatatacttGAAACAAGAAGAAGAACTGATTATCCCAGATGAAGATTCAAGTCCTGGTCCCTCATTTCTGCAACCAGGTGGTTCAGAATTTGTGGTAGGTGAGCCAGATATAGAATCTCATGATGTTCCGACTGGTGGAAATAgcaatgaaaagaaaagtatagaagGTGCCAAGGATAGTTGTCATAGAGGTGAGAAGCCCCATCATTGTCCTCACTGTGCCTATAAATGTATTACACCTCATGatttgaaaatacatataatggcacgtcatacaggtgagaagcctcatcactGTCCTCACTGTGACTATAAATGTGTTAGACCTCAAGATTTGAAAAGACATATAATGGCACGTCATACAGGTGAGAAACCTCATCACTGTCCTCACTGTGACTATGCATCTGTTACACCTCAGGTTTTGAAAAGACATATAATGGCACTTCATACGAATGAGAAACCTCACCattgtcctcattgtgattataaatcaacaCAATCTGGAAGTATAGAAAGtcatataatggcccgtcatacaggtgagaaacctcatcaatgtcctcactgtgacTATGCATCTGTTACACCTCAGGTTTTGAAAAGACATATAATGGCACTTCATACGAATGAGAAACCTCACCattgtcctcattgtgattataaatcaacaCAATCTGGAAGTATGGAAAGTCATATAATGGCCCATCATACAAGAGAGAAACCTCATCAGTgccctcattgtgattataaatcagctCAGTGTGGAAGTATGAAAAATCAcataatggcccgtcatacaGAAGAGAAGCCTCACCactgtcctcattgtgattataagtGTATTTTacctcataatttgaaaatcCACATAATGGCAcgtcatacaggtgagaagcctcatcactGTCTTCACTGTGACTATAAATCTGTTACCCATCGAGGATTGAAAAGACATATAATGGCTCACCATACAGGTGAGAAACCTCATCactgtcctcattgtgattataaatgtattgaatCTCAAGATTTGAAAAGACATATAATGTCACGGCATACAGGTGAGATGCCCTACCAATGTCTTCACTGTTACTATAAATCTGTTACATCTCGAGaattaaaaagtcatataatAGCACGTCATACCGGTGAAAAGCCTCATAAATGTTcccattgtgattataaatctatTACAAGTAAAGATTTGAAAAGACATTTAATGGCACGTCATACAGGAGAGATGCCTCACCACTGTCCACACTGTCACTATAAATCTGTTACACCTCGAGAAATGAAAAGGCATATTATGTACCATCATACAGGTGAGAAACCTCATCGCTGTCCTCACTGTGACTATGCAGCTGTTACTCTTCAAGAGttaaaaagacatataatgGCACGTCATTCAGGAGAAAAAGCCCGATCactgtcctcattgtga
- Protein Sequence
- MQLHTDEKPHQCPHCAHKFITTEILNIHIMTYHTSENPHQCPLCDHKFITTQVLKNNVMVKHSNMKPHHCPHCDYESVSIVRIKRHIMACNRANKPHHCPHCDLKCIRIRALRNHIMAHHTDMKPYQCPHCDHNYIILLDLVTHIATCHTGEKSRNCPYCLYKSARCGKMKRHIMAHYTGEKPHQCSHCDYKSIIPQDLKRHELVHLTDKKPHHCLHCGHNYTTLQDLINHCPYSHWYFKSGLKNHVLAQHTGPNNFAVCLPKEMTDETNHSLATINIKREEEEQEQEIYFGDHVYVKEEPHFILEEAGGLTHVKEEIYLKQEEELIIPDEDSSPGPSFLQPGGSEFVVGEPDIESHDVPTGGNSNEKKSIEGAKDSCHRGEKPHHCPHCAYKCITPHDLKIHIMARHTGEKPHHCPHCDYKCVRPQDLKRHIMARHTGEKPHHCPHCDYASVTPQVLKRHIMALHTNEKPHHCPHCDYKSTQSGSIESHIMARHTGEKPHQCPHCDYASVTPQVLKRHIMALHTNEKPHHCPHCDYKSTQSGSMESHIMAHHTREKPHQCPHCDYKSAQCGSMKNHIMARHTEEKPHHCPHCDYKCILPHNLKIHIMARHTGEKPHHCLHCDYKSVTHRGLKRHIMAHHTGEKPHHCPHCDYKCIESQDLKRHIMSRHTGEMPYQCLHCYYKSVTSRELKSHIIARHTGEKPHKCSHCDYKSITSKDLKRHLMARHTGEMPHHCPHCHYKSVTPREMKRHIMYHHTGEKPHRCPHCDYAAVTLQELKRHIMARHSGEKARSLSSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -