Hhal011752.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:23460-43831[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.76 30 4.8 0.1 4 23 96 116 96 116 0.94 2 21 0.0085 0.34 11.0 2.9 2 23 123 145 122 145 0.95 3 21 0.024 0.95 9.6 6.6 3 23 153 173 151 174 0.93 4 21 0.0051 0.2 11.7 3.6 1 23 180 203 180 203 0.97 5 21 5.7 2.3e+02 2.1 3.4 1 23 209 232 209 232 0.88 6 21 0.4 16 5.7 1.1 1 23 238 261 238 261 0.89 7 21 0.26 10 6.3 2.8 1 23 267 290 267 290 0.93 8 21 0.044 1.8 8.7 1.6 1 23 296 319 296 319 0.95 9 21 0.00026 0.01 15.7 1.7 2 23 326 347 325 348 0.95 10 21 0.0085 0.34 11.0 3.3 1 23 354 377 354 377 0.96 11 21 0.21 8.5 6.6 4.3 1 23 387 409 387 410 0.95 12 21 0.046 1.8 8.7 3.8 2 23 673 695 672 695 0.97 13 21 0.036 1.4 9.0 0.6 1 23 701 724 701 724 0.94 14 21 5.5e-05 0.0022 17.9 4.3 2 23 731 753 730 753 0.95 15 21 0.00058 0.023 14.6 4.7 1 23 759 781 759 781 0.98 16 21 0.028 1.1 9.3 6.4 1 23 787 809 787 810 0.96 17 21 0.0019 0.075 13.0 2.5 1 23 816 838 816 839 0.94 18 21 0.033 1.3 9.1 4.3 1 23 845 867 845 868 0.95 19 21 0.002 0.08 12.9 2.8 1 23 874 897 874 897 0.93 20 21 1.2 47 4.2 2.5 1 23 903 926 903 926 0.93 21 21 0.00046 0.019 14.9 1.5 1 23 932 955 932 955 0.94
Sequence Information
- Coding Sequence
- ATGGAAGAAATTTtaatGACTAACTCAAATGctattaataaagaagaaaaaacagatGGAACTGAGCCTCCTCTTCCCATGGCTGATATCAAGCTGGAGGAAGGGCTGCAGTCTTATTATGATGGGTTGACTCATATGAAACAAGAAGATGAGGTCCTTGTTCCAGATGATGGCACCTGGAAACCAATCCACAAGTCACATGAGTCAAGTCCTCATGAATCAAAAACTAAGATGGATGTGAAATCAGAAAGGGAATTTTTATTCACTCATGAGATACAAGTCCGTCCTCATTGTGACTATAAAGGAGTAGAAAATATTACTCTAAAAAAGCATATTATGGTCTTTCATACAACTGAGGGACCTcttcaatgtcctcattgtgattataaaggAACACAAATCAtggctttaaaaaaacatataaaaaattgccATACTAGTGAGAAGCCTCATCTATGCCCACATTGTGATTTCAAAACACAGTAttctacaaatttaaaaaaccacATTATGTCCCAtcatactggtgagaagccCCATCAATGTCATCTCTGTGACTATAAAGCTGTAGCaagttatgatttaaaaaaacatatgatgCGCCGTCATCTGGGTGAGAAGTCGCACGCGTGTCCTCATTGTAACTATAAAGCATTACAAATTTGTACTCTAAAAAGACACATAATGGCTCTTCATACAGgagagaagcctcatcaatgtcctcattgtgactaTAAAGCAATAGCAATTACAAgtgtaaaaaaacatataatggcccgtcatTCGGGTGAGAAGCCTTTTCACTGCCCTCATTGTGACTATAAAGCAGTGACATTTAGTTCTATAAAATATCACTTAATGGCCAATCATACAGGTGAAAAGCCACATCAATGCCCCCACTGTGATTATAAAGCCATATCAAGTGGTATGATAAGGAGCCATATTCTGTACCGTCATTCTGACGAGAAGCCTCTTCAATGCCCTTATTGTGACTATAAAGCagtaaaaaatgttgctttaaatCATCATATGATGACTCATCATACAGGTGAGAAACCTCatcagtgtcctcattgtgTTTATAAAGCAGTAAGAATTAGAAATTTGAAAAGACATATAAAGAACAATCACACAGGTGAGAAACCACCTCTTCAaactcatcaatgtcctcattgtgaatataaagcaGTACGAATTAGATATGTAAAAGCTCATATAAAGAACCATCATATTAAAAGTACAACTTCccttaatgttttaatgaatgtttatgttaaaaataaattatatactgtcGCTGAGGCTTTGATATCTTTTAAGTACGAGAATCTGTATACCATTGgtgattcttttgtttttataaaagaagaaaagattgaTGAAACTGAGACTTCTTgGATGAGTGACTCTTCTGATGCCATGAAAGGAGAGAAAACAGATGAAACCGAGCCTTCTTGTATGAATGAACCTTTTGTCGTTATCAAAGAAGAAAATACTAACGAAAATGAGGTTTCTTgTTTGAATAACTTCGGTGGTTTTagtgaagaagaaaagaaagatgaaACTGAGACTTCcagtatGAACGActcgtttgtttttattaaagaagaaaaaacagatGAAAATGAGGCTtctagtatgagTGACTCCTATGTTTTCAATGAAGATGAAATGGAAGAAGAAAGTGAGGTTTCTTATGGACAGACTCATGTGAAACATGAAGAAGAGGCTCTTGTCCCAGATAATGATAACAAGGATCCTCTTGACAACTCGCAGACCAGCCagtataaagtaaaaactaagaCGAATCTAGATTTCATTAGGATGTCACAAGGCCGATATAATTCCTTTGAGTATGGTTATAAAACTGTTGAATCCTCTAAATCAAGAAAAGACTTATCAActtatcataaaacaaaaaaatgtcaagATTGTCCCAATTGCAATTGTAAAGAAGCAGCAAGTTTCACATTCGAAAGCAATAAAATGACACATCATATGGTTGTAGAATCTCAGCAGTGTCTCAAGTGTGATTGTATAGTAACAGacattaaagatttaaaagCACATATGAAGAAGTGTCATAGAGATGAAAAGCCCCATCAATGTCCTTACTGTGACTATAAAGCAGTgactattagtattttaaagagGCATTTAATGGCCCGTCACACTGTTGAGAAGTCTcttcaatgtcctcattgtgactataaaacatcggaaaaaagtaatttacagAGACATATAAAGCATAATCACACAGgcgagaagcctcatcaatgtcctcattgtgactaTAAAACGGTAACTATTGGTCATTTAAGAACACATATTATGCGTCATACAGGTgaaaagcctcatcaatgttCTCATTGTAAATATGGAACGGTAACTattgctaaattaaaaacacatatgATGAGGCAtcatacaggtgagaagccccaccagtgtcctcattgtgactaTAGAACAGTAACTGTAGGTCAGTTAAGAGCACACACCATTGCCCATCATACTGGCGAGAGGCCCCATCAGTGTCCTCATTGCGACTATAAAGCAACACTGGTAGAAACTCTAAAAACACATATATTGAGGCATCATACAGCCGAGAAGCCTCatcagtgtcctcattgtgactTCAAAACGGTAACAGTTAGTCAATTGAAAACACATATAACTGCTCGTCATACGGGCGAGAAGCCTCACCAATGCTCTGAATGCGATTATAGAGCATTAAGGGTTAGTTGTTTGAAAAGCCATATTATGGCCTATCATACAGGCGAAAGGCCTTATCAATGTCCGCATTGTGAGTTTAGAGCAATAACAAATGGTCATTTGAAAAGGCATATTATAGCCCGTCATAGAGGTGATTAG
- Protein Sequence
- MEEILMTNSNAINKEEKTDGTEPPLPMADIKLEEGLQSYYDGLTHMKQEDEVLVPDDGTWKPIHKSHESSPHESKTKMDVKSEREFLFTHEIQVRPHCDYKGVENITLKKHIMVFHTTEGPLQCPHCDYKGTQIMALKKHIKNCHTSEKPHLCPHCDFKTQYSTNLKNHIMSHHTGEKPHQCHLCDYKAVASYDLKKHMMRRHLGEKSHACPHCNYKALQICTLKRHIMALHTGEKPHQCPHCDYKAIAITSVKKHIMARHSGEKPFHCPHCDYKAVTFSSIKYHLMANHTGEKPHQCPHCDYKAISSGMIRSHILYRHSDEKPLQCPYCDYKAVKNVALNHHMMTHHTGEKPHQCPHCVYKAVRIRNLKRHIKNNHTGEKPPLQTHQCPHCEYKAVRIRYVKAHIKNHHIKSTTSLNVLMNVYVKNKLYTVAEALISFKYENLYTIGDSFVFIKEEKIDETETSWMSDSSDAMKGEKTDETEPSCMNEPFVVIKEENTNENEVSCLNNFGGFSEEEKKDETETSSMNDSFVFIKEEKTDENEASSMSDSYVFNEDEMEEESEVSYGQTHVKHEEEALVPDNDNKDPLDNSQTSQYKVKTKTNLDFIRMSQGRYNSFEYGYKTVESSKSRKDLSTYHKTKKCQDCPNCNCKEAASFTFESNKMTHHMVVESQQCLKCDCIVTDIKDLKAHMKKCHRDEKPHQCPYCDYKAVTISILKRHLMARHTVEKSLQCPHCDYKTSEKSNLQRHIKHNHTGEKPHQCPHCDYKTVTIGHLRTHIMRHTGEKPHQCSHCKYGTVTIAKLKTHMMRHHTGEKPHQCPHCDYRTVTVGQLRAHTIAHHTGERPHQCPHCDYKATLVETLKTHILRHHTAEKPHQCPHCDFKTVTVSQLKTHITARHTGEKPHQCSECDYRALRVSCLKSHIMAYHTGERPYQCPHCEFRAITNGHLKRHIIARHRGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -