Hhal010747.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:454736-467557[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.088 3.5 7.8 5.6 1 23 149 172 149 172 0.92 2 15 0.0011 0.042 13.8 3.6 1 23 178 201 178 201 0.96 3 15 0.14 5.5 7.2 9.1 1 23 207 229 207 230 0.96 4 15 0.0011 0.044 13.7 3.3 1 23 237 259 237 260 0.96 5 15 0.0015 0.058 13.4 2.5 1 23 266 288 266 289 0.95 6 15 2.7e-05 0.0011 18.8 2.4 1 23 295 317 295 318 0.95 7 15 0.0047 0.19 11.8 4.7 1 23 324 347 324 347 0.96 8 15 0.0015 0.062 13.3 3.3 1 23 353 376 353 376 0.96 9 15 0.0082 0.33 11.0 4.8 1 23 382 404 382 405 0.96 10 15 0.0066 0.27 11.3 1.5 1 23 411 434 411 434 0.94 11 15 0.00032 0.013 15.4 1.7 2 23 441 463 440 463 0.94 12 15 0.008 0.32 11.0 3.5 1 23 469 491 469 492 0.95 13 15 0.0062 0.25 11.4 2.1 1 23 498 521 498 521 0.96 14 15 3.1 1.2e+02 2.9 6.4 1 23 527 549 527 550 0.95 15 15 0.77 31 4.8 6.7 1 23 556 579 556 579 0.95
Sequence Information
- Coding Sequence
- ATGGATGAGAGTGGTTTAAGTATCAGCTATATATCTCATGATGTTAcgataaaagaagaaatgattGATGAAACTGAGTCTGATTgtctAAGTAATGGAAGtgttataattaaagaagaagtGACTGAAGAAACTGAGTTAAATTATGGCTTGAATTATGTAAAACAAGAAGAAGATTTGATTCTTCTTAATGAAGttcCCAAAATCGATATCAAAGCAGAGGAAGGGCTACAAATTAATTGTGatttcaagaatccagttgagaaaaaagaaaaggttcATGAGTCTGTCATAAAAACTAAGAAGAATGGTGATATGAATGAACTTATCAAATCTCAtctaaaaactgaaaagtaTCATCAATGCCCTGATTGGGAATATAAAGCTGCAACAATTACTAAGTTCAAAGATGATATAATGGCCTGCCATACAAGCAATAAGCCTCATAAATGTCCCCATTGTGACTATAGTTCagttaaaaaacatgttttaaaaattcatgtaaTAGCATGTCATGCAGGTGATAAGCCTTATAAATGCTCTCATTGTGACTATAAAACTGTGACAAACACTAAGTTGAAATATCATATAATGGCACGCCATACAGGTGAAAGGCCTCATAAATGTCACCATTGTAACTACAGTGCAGTTGAAATgcatagtttaaaaaatcatataatggtCCACCATACAGGTGATAATAAGCCTCATAAATGCCCCCATTGTGAGTACAGTGCAGTTCAAACGAACGctttgaaaattcatataatgaCACACCATACAGGTGATAAGCCACATAAATGTCCCCATTGCGACTACAGTGCAGTTCAAAAGAATGCTATAAAAGTTCATATAATGATCCACCATACAGCTGataagcctcatcaatgtccccATTGCGACTATAGTGCAGTTACAAAAGGtgcattaaaaaatcatataatggtCCACCATACAGGTGATAAGCCTCATAAATGTCCCCATTGCGACTACAGTACAGTTAAAAAGGATGTTTTAAGAGTTCATGTAATGTCATGCCATACAGGAGATAAGCCTTATAAATGCTTTCATTGTGACTATAAAACAGTAACCAATACTAAGTTAAAAGACCATATAATGGCTCGCCATACGGGTAATAAACCTCATAAGTGTCACTATTGCGACTACAGTGCAGTTGAAATGCgtagtttaaaaaatcatataatggtCCATCATATAGGTGACAAGCCTCATAAATGTGCCTATTGTGACTACAGTGCAGTTCAGAAGAATGCTTTAAAAATTCATGTAATGGCATGCCATACAGGTGATAAGCCTAATAAATGTCCACATTGCGATTACAGTGCAGTTCAAAAGAGCACTTTAAAAGTTCATATAATTGCTTGCCATACAGATGATAAGCCTTATAAATGCtttcattgtgattataaagcgGTAACCAACACAAAGTTAAAAGATCATATAATAGCCCACCACACAGGTGATAAGCCTCATAAATGTCCCCATTGCGATTACAGTGCTGTTCAAATGCGtagattaaaaaatcatataatagtaCGCCATACAGATGATAAGCCTCATCAATGCTTTCATTGTGAATTTAAAGCAGCaacaattactaaattaaaataccatATAATGTCCCACCATATAAGTGATAAGTCTCATAAATGTCCCCATTGCAACTTCAAGAcagttcaaaaatgtattttaaaaaatcatataaaagcaCAGCATACAGGTTATAAGCCCTTGAAgaggttcattaaaaaaataacacaaataagttga
- Protein Sequence
- MDESGLSISYISHDVTIKEEMIDETESDCLSNGSVIIKEEVTEETELNYGLNYVKQEEDLILLNEVPKIDIKAEEGLQINCDFKNPVEKKEKVHESVIKTKKNGDMNELIKSHLKTEKYHQCPDWEYKAATITKFKDDIMACHTSNKPHKCPHCDYSSVKKHVLKIHVIACHAGDKPYKCSHCDYKTVTNTKLKYHIMARHTGERPHKCHHCNYSAVEMHSLKNHIMVHHTGDNKPHKCPHCEYSAVQTNALKIHIMTHHTGDKPHKCPHCDYSAVQKNAIKVHIMIHHTADKPHQCPHCDYSAVTKGALKNHIMVHHTGDKPHKCPHCDYSTVKKDVLRVHVMSCHTGDKPYKCFHCDYKTVTNTKLKDHIMARHTGNKPHKCHYCDYSAVEMRSLKNHIMVHHIGDKPHKCAYCDYSAVQKNALKIHVMACHTGDKPNKCPHCDYSAVQKSTLKVHIIACHTDDKPYKCFHCDYKAVTNTKLKDHIIAHHTGDKPHKCPHCDYSAVQMRRLKNHIIVRHTDDKPHQCFHCEFKAATITKLKYHIMSHHISDKSHKCPHCNFKTVQKCILKNHIKAQHTGYKPLKRFIKKITQIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -