Hhal002791.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:50475-61183[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0052 0.21 11.6 4.2 1 23 136 159 136 159 0.96 2 19 5.6e-05 0.0023 17.8 0.3 1 23 165 187 165 187 0.98 3 19 0.00087 0.035 14.1 5.5 1 23 193 215 193 216 0.94 4 19 0.047 1.9 8.6 0.8 1 22 222 243 222 245 0.90 5 19 0.0011 0.044 13.8 3.0 1 23 251 274 251 274 0.96 6 19 0.0062 0.25 11.4 3.5 1 23 280 302 280 303 0.95 7 19 0.0099 0.39 10.8 6.5 1 23 309 332 309 332 0.96 8 19 8.1e-05 0.0032 17.3 1.1 2 23 339 360 338 361 0.94 9 19 0.0043 0.17 11.9 6.3 1 23 396 418 396 419 0.96 10 19 0.015 0.61 10.2 7.0 1 23 425 447 425 448 0.95 11 19 0.0045 0.18 11.8 6.3 1 23 454 476 454 477 0.95 12 19 0.002 0.078 13.0 3.7 1 23 483 506 483 506 0.97 13 19 0.0019 0.075 13.0 3.4 1 23 512 534 512 535 0.95 14 19 0.00072 0.029 14.3 1.1 1 23 541 564 541 564 0.98 15 19 0.05 2 8.5 3.1 1 23 570 593 570 593 0.94 16 19 0.63 25 5.1 2.5 2 23 600 622 599 622 0.92 17 19 0.0063 0.25 11.4 1.9 1 23 628 651 628 651 0.96 18 19 0.59 24 5.2 6.7 1 23 686 709 686 709 0.97 19 19 4.1 1.6e+02 2.5 5.9 1 23 744 766 744 767 0.95
Sequence Information
- Coding Sequence
- ATGGAAGAAGCTGATCGAAAGCCTGGTTTCAAACAAGAGGAAAGACCACAAATTTATTATGATGGGCTTGTACATGTGAAggaagaaaaggaagaaatcCTTGTCCCAGATGATGgtTGTCTAATCCAtgtgaaagaagaagaaatgctCGTCCCAGATGATgaTGGCCTTGTTCATGTGAAAGAAGAAGTGCTCATTCCAGATAGTGatgcaGAGGATTCCTTTGATAAGATAGAAGAAATCAGTAAATCTGGCTTgaaagataagataaaaatggatttgaaaaaatgtatttcttactGTAAAGTTCGGAAGACTTTTCTATGTTTTCACTGTAACTACAATGTTCTGGAGtttcttaaattgaaaaaacatataatacgCCACCACATATGTGAGAAGCCTTATCAATGTtctcactgtgattataaagcTGCAACCAGTCGTACATTAAAATCACATATATTGCACCGTCATACTGATGAAAAACCATATCAATGTCCTGAATGTGATTACAAAACCGTAACAACGggtcaattaaaattacatataatgcaGCATACTGGTAATAAACCTCATCattgtcctcattgtgattataaagctGTGAGAAGTGGTAATTTAAAAGTTCACATTATGAGCCATCATACCGAAGAGAAGCCCCATCAATGTCCTCAGTGTGATTATAAAGCTGTCTCAAATAGTCTAATAAAATCACATATAGTATTCCGTCATGGTGGTAAGAAgtctcatcaatgtcctcactgtaATTATAAAGCTGTATTTAATAGTCTTTTAGAACGACATATCAAGCTCCGTCACACTGGTGAAAAGCCTCATAAATGccctcactgtgattataaagcTGTATTAAGTGATCAGTTAAACTTACATATAATGCAACATCATACTGATGAGAAGCCTTATCAATGTtctcactgtgattataaagcTGTAACCTGCTCTCAATTAAAGTCACATATATTGCACCGTCATACTGTTGAAAAGCCTCTTCAATGTCCTGAATGCGATTTTAAAACCGTAACAAAAGGTCAATTGAAGTCACATATAATAAGGCATCATACTGGTGATAAACCTTATCATTGTCCTCACTGCGATTATAAAGCTGTCTGTAGGGGTCACATAAAATCACATATAATGTATAAtcatactggtgagaagcctcatcaatgtcctcactgtgattataaagcTGTAACAAGTGGTCATATTAAATCACATATAAGGTCTCATCATACTAAGGAGAAGCCTCATCagtgtcctcactgtgattataaaggTACAACAAAAcctcaattaaaattacatgtaaTGCACCACCATACTGGTGAAaaacctcatcaatgtcctcactgtgattatagAACTGTTGTAAAGggtcaattaaaattacatataatgcaTCACCATtctggtgagaagcctcatcaatgtcctcactgtgattataaatctgTAACAAATCgtcaaatgaaattacatataatgcGCCTCCATACAGGTgaaaagcctcatcaatgttCTCAATGTGAATATAAAACTGTTACAAGTAGtgcattaaaattacatataatgcaACACcatactggtgagaagcctTATCGATGTTCTGtttgtgattataaatttttattaaatgctgATTTAAAAAGACATATAAAGAGCCGTCATACAGGTGAGAGGCCTCATCATTGTCCTGTTTgtgattataaaactttatcaaaagttaatttaaaatcacatataatGTATCAGcatactggtgagaagcctcttcaatgtcctcactgtgattataaagcTGTAGCAAGTTGTCAAATGAAATCACATATAAGCTATCGTCATACAGGTGAAAAGACTCATCAATGTTCTCAATGTGAATATAAAACTGTTACAAGTACtgcattaaaattacatataatgcaACGCCATAATGGTGAGAAGCCTTTTCGATGTTCTCTTTGTGATTATCAAGCTGTAaaaggttatattttaaaaacacatgtaATGCATCACCATACAGGTGAGAGGCCTCATCAATGTCCCCATTGTAAATATAAAGCTGTAACAAGTAGTCGAATAAAATTGCATATTAAGAGGTGTCATGCAGATAAGAAGATGGAAGAAATCAACCAGTCTGGCTTAAAAGCTGGAGTGaagaaggattttaaaaaatctatttctcatCTTACAGTAGCTCAGAAggcttttaaatgtttttactgtaaCTTTAATACTTTGAAGTTTAATCAATTGAAGAAACATATAATGCTACACCATATATGTAAAAAGTTTCATCAATGA
- Protein Sequence
- MEEADRKPGFKQEERPQIYYDGLVHVKEEKEEILVPDDGCLIHVKEEEMLVPDDDGLVHVKEEVLIPDSDAEDSFDKIEEISKSGLKDKIKMDLKKCISYCKVRKTFLCFHCNYNVLEFLKLKKHIIRHHICEKPYQCSHCDYKAATSRTLKSHILHRHTDEKPYQCPECDYKTVTTGQLKLHIMQHTGNKPHHCPHCDYKAVRSGNLKVHIMSHHTEEKPHQCPQCDYKAVSNSLIKSHIVFRHGGKKSHQCPHCNYKAVFNSLLERHIKLRHTGEKPHKCPHCDYKAVLSDQLNLHIMQHHTDEKPYQCSHCDYKAVTCSQLKSHILHRHTVEKPLQCPECDFKTVTKGQLKSHIIRHHTGDKPYHCPHCDYKAVCRGHIKSHIMYNHTGEKPHQCPHCDYKAVTSGHIKSHIRSHHTKEKPHQCPHCDYKGTTKPQLKLHVMHHHTGEKPHQCPHCDYRTVVKGQLKLHIMHHHSGEKPHQCPHCDYKSVTNRQMKLHIMRLHTGEKPHQCSQCEYKTVTSSALKLHIMQHHTGEKPYRCSVCDYKFLLNADLKRHIKSRHTGERPHHCPVCDYKTLSKVNLKSHIMYQHTGEKPLQCPHCDYKAVASCQMKSHISYRHTGEKTHQCSQCEYKTVTSTALKLHIMQRHNGEKPFRCSLCDYQAVKGYILKTHVMHHHTGERPHQCPHCKYKAVTSSRIKLHIKRCHADKKMEEINQSGLKAGVKKDFKKSISHLTVAQKAFKCFYCNFNTLKFNQLKKHIMLHHICKKFHQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -