Hhal003353.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:16095-32779[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.14 5.8 7.1 1.4 1 23 129 152 129 152 0.93 2 19 0.065 2.6 8.2 3.4 2 23 159 181 158 181 0.93 3 19 0.0023 0.092 12.8 5.0 1 23 187 209 187 210 0.95 4 19 0.032 1.3 9.1 0.8 2 23 217 238 216 239 0.94 5 19 0.0018 0.073 13.1 3.2 1 21 245 265 245 268 0.93 6 19 3 1.2e+02 2.9 3.0 1 23 274 297 274 297 0.91 7 19 0.11 4.3 7.5 1.5 1 23 303 326 303 326 0.95 8 19 0.00063 0.025 14.5 1.3 1 23 332 355 332 355 0.95 9 19 0.26 10 6.3 3.9 1 23 361 384 361 384 0.95 10 19 0.00051 0.021 14.8 3.2 1 23 390 413 390 413 0.97 11 19 0.0012 0.05 13.6 1.9 1 23 419 442 419 442 0.96 12 19 4.7e-05 0.0019 18.1 3.3 1 23 448 470 448 471 0.95 13 19 0.0012 0.047 13.7 0.6 1 23 477 499 477 500 0.96 14 19 0.16 6.2 7.0 1.3 1 23 506 529 506 529 0.94 15 19 0.014 0.57 10.3 5.9 1 23 535 557 535 558 0.95 16 19 0.058 2.3 8.3 1.2 1 23 564 587 564 587 0.93 17 19 0.00076 0.03 14.3 1.8 1 23 593 616 593 616 0.98 18 19 0.036 1.4 9.0 2.8 2 23 623 644 622 645 0.93 19 19 1.4 56 4.0 3.5 1 23 651 673 651 673 0.96
Sequence Information
- Coding Sequence
- atggATCAAATTGTTGTGATTAACCCAGGTATTTcaattaaacaagaaattacTGATGAAATGGAGCCCACTTTTTCAATGATGGATATCAAAGAAGAGGGAGTAACTGAAGTCTATCGcaTTTCAATTATTGATGATATCAAAGAAGAGGGAATACCTGAAATCTATCACATTTCAATGACTGATGATATCAAAGAAGAGGTAGTACCTGAGATCTATTACGGTAGATTTACCCATGTGAAAGAAGAAGTAGAACTGTTTATCCCTGatgaaaataCACAAAATCCTCTGTACGAGGGAAAGGATACTAAAAAGTATGATTTGGAATTTGCTAATAACATGGATTTGACAGAGTGCGTAATGTCTCATAGTGCCGAGAACCCTCATAactgtcctcattgtgatttcATAAACGTAGATAAAATCCTTTTGGAAAAACACATCAAGGACAATCATGGAAAGGAGAGACCTTGCccatgtcctcattgtgaatataaatcagcaGAAGCATGTAGTTTAAAAAGACATTTAAAGGCAATTCATAGAAATGAGAGGCCTCATCAATGTTCCCATTGTGactataaaacaatagaaattggaaatttaaaaaggcATATAATGTCCCAtcatacaggtgagaagccCAATAAATGTCCCCATTGTGACTATAAAGCAGTATCAGCAGTTAATGTAAGAATGCATGTAATGGCCCATCATTCAGataataaacctcataattgCCCTGATTGTGACTTTAAAACAATCAGagcaaatcatttaaaaaggcATATAATGCCCCATCATACAGATAAGAGGCCTCATAACTGTCCCCATTGTGACTTTAAAGCAGTAGAGGCAAATCATGTAAAACTGCATGTAATGTACTATCATACAAATGATAAGCCTCATAAGTGCCCTCAGTGTAACTACAAAACGGTAGAAGCTAATATATTAAAGAGACATATAATGTATCGTCATACACATTACAGACCTCATAAGTGTCCCCATTGTGAATTTAAAACAGCAGGAGCGAGTAGTTTACAAAGACATATTCAGGCCCTTCATACAGGTGAAAGACCTCATAAGTGTCCTCGTTGTAGCTTTGAAACAGCAAGAgcttgttatttaaaacaacatGTAAAAGCCCGTCATACTGgagagaagcctcatcaatgccCACACTGCGATTATAAAGCTGTTGAAAGAACAAATCTAAAAAAGCATATAATGTCCCGTCATTCAGGTGAAAAGCCttataaatgtcaatattgtGAGTATAAAACAGTAGActcatatagtttaaaaatgcaTGTTATGTACCGTCATTCATTTGAGAAACCTCATAAATGTCTCCAATGTGACTATTCAACACCAAGaccaagttatttaaaaaaacatataatggtCCATCATACAGGTGATAAGCCTTACAAATGTCCTGATTGTGACTTCAGAGGTGTAGATATAACTGttctaaaaaaacatatcttGACCCATCATTCAGGTGAGAGACCTCATAAATGTTCCTATTGTGATTTTAGAGCTGTAACTGTTGCTGttctaaaaaaacatgtaatgtaccgtcatactggtgagaagccACATAAGTGTACTCAATGTTCCTTTAAAACAGTAGAAGCAAGTCATTTAAAAAGGCACATAATGGCCCATCACACAGATGAGAGGCCTTTTAAGTGTCCCCATTGTGACTTTAAAGCAGTAGAAGAAAGGCGTCTAAAAAGGCATGTAATGGCCCGTCATACAGATGAGAAGCCCTATAAATGTCCACATTGTGATTTTAAAACAGTATATGCCGGTTATGTTAGAAAACATATCAAAGTCCGTCATGGAAGTGACAAGCTTCTTAATTGTCCTCATTGTGTATTTAAAACTgtctatgaaaataatttgaaattacatatgAAGGCACATCATTCAGATAAGAAGCCTTTTCAATGTTATCATTGTTGCTttgaaacagttaaaaaaagtgCCCTAAAGGAACATATAATTGCCCATAATACAGGTGAAAGGTCTCATCAAAGTGGTGTAAAGGAACATATAACTGCCCTTAATACAGGTAAAAAGTCTCGTCAAAGCCATCCAGATGGTTAG
- Protein Sequence
- MDQIVVINPGISIKQEITDEMEPTFSMMDIKEEGVTEVYRISIIDDIKEEGIPEIYHISMTDDIKEEVVPEIYYGRFTHVKEEVELFIPDENTQNPLYEGKDTKKYDLEFANNMDLTECVMSHSAENPHNCPHCDFINVDKILLEKHIKDNHGKERPCPCPHCEYKSAEACSLKRHLKAIHRNERPHQCSHCDYKTIEIGNLKRHIMSHHTGEKPNKCPHCDYKAVSAVNVRMHVMAHHSDNKPHNCPDCDFKTIRANHLKRHIMPHHTDKRPHNCPHCDFKAVEANHVKLHVMYYHTNDKPHKCPQCNYKTVEANILKRHIMYRHTHYRPHKCPHCEFKTAGASSLQRHIQALHTGERPHKCPRCSFETARACYLKQHVKARHTGEKPHQCPHCDYKAVERTNLKKHIMSRHSGEKPYKCQYCEYKTVDSYSLKMHVMYRHSFEKPHKCLQCDYSTPRPSYLKKHIMVHHTGDKPYKCPDCDFRGVDITVLKKHILTHHSGERPHKCSYCDFRAVTVAVLKKHVMYRHTGEKPHKCTQCSFKTVEASHLKRHIMAHHTDERPFKCPHCDFKAVEERRLKRHVMARHTDEKPYKCPHCDFKTVYAGYVRKHIKVRHGSDKLLNCPHCVFKTVYENNLKLHMKAHHSDKKPFQCYHCCFETVKKSALKEHIIAHNTGERSHQSGVKEHITALNTGKKSRQSHPDG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -