Hhal011109.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:589455-613425[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00059 0.024 14.6 3.2 1 23 177 199 177 199 0.98 2 23 0.0074 0.29 11.2 2.4 1 23 205 228 205 228 0.96 3 23 0.39 16 5.7 4.1 1 23 234 257 234 257 0.97 4 23 0.069 2.8 8.1 0.4 1 23 263 286 263 286 0.93 5 23 0.15 6 7.0 0.5 1 23 292 315 292 315 0.93 6 23 0.035 1.4 9.0 1.7 2 23 319 341 318 341 0.97 7 23 0.55 22 5.3 0.4 1 23 347 370 347 370 0.91 8 23 0.0011 0.045 13.7 1.3 1 23 376 399 376 399 0.96 9 23 0.027 1.1 9.4 3.5 1 23 401 424 401 424 0.97 10 23 0.15 5.9 7.1 1.9 2 23 459 481 458 481 0.97 11 23 0.28 11 6.2 0.3 1 23 487 510 487 510 0.94 12 23 0.0086 0.34 10.9 1.9 1 23 516 539 516 539 0.97 13 23 0.011 0.45 10.6 3.5 3 23 586 607 585 607 0.96 14 23 0.07 2.8 8.1 0.2 1 23 613 636 613 636 0.96 15 23 0.0079 0.32 11.1 0.8 1 23 642 665 642 665 0.97 16 23 0.0091 0.37 10.9 3.2 2 23 741 763 740 763 0.95 17 23 0.026 1 9.5 0.2 1 23 769 792 769 792 0.96 18 23 0.059 2.4 8.3 2.0 1 23 798 821 798 821 0.93 19 23 0.055 2.2 8.4 1.7 2 23 828 850 827 850 0.94 20 23 0.039 1.6 8.9 2.1 2 23 857 879 856 879 0.96 21 23 4 1.6e+02 2.6 2.0 3 23 887 908 886 908 0.94 22 23 0.0073 0.29 11.2 0.7 1 23 966 989 966 989 0.98 23 23 0.055 2.2 8.4 1.0 1 23 995 1018 995 1018 0.96
Sequence Information
- Coding Sequence
- ATGGAGCCTTTAGaCCCTATTTTTCCAGCAATGGCCAGAACACAtattaagaatgaaataaaagaagaaccCGAGTTTTCTGCTCATCATGTAGCCAGTCCTAAGAAAACAGAGGAGGAGGATAAGATGGcttTTACAGTTGTGGTTGACCTGCACCAAAAGAAGCTCTTGATTGGAGatgataACATACCCTCTcaagtatttataaaacaagaaCTTTTTGAAGAGGGGGAGAACATAATTGAAGACGGTTTTTTTGATGAAGGTCATTTTCCTTCTGACAATATTGATCTAGGAATTGTCAAGCAAGAGAAAGAATTTGTCTTAGAAGAGCCTTCTGTAAAATACTgttttcaagCTAGGCAAGAAACTGTAGAAGTACTTATTCAATCCCCTGTTGATAGGGAAGTATCTGTTGCCAAAGCTGCATTAACGATTTATTcTCCTCCAGGTAAAGAACAGAAGGACTCTGTTGATGACAATATTCAAGCCACTATTAATGgacctACTCGTAAAACATCAAAAATTCATCAGTGTCTTCTGTGTCCTTACAAAACTGGGAGGCCTGATCATTTAAAACGACATCAAAAGGTCCATCTTAAAGATAAACCACATAAATGTTCACAATGTACTTATAAAACTGTTGAACCTGTTTCACTTAAGAAACATATGATGTTAAAACACCCACCAGAGAAACCGTACCAATGTCCAAAATGTCAGTATAAATGCTTAAGTGAGCGGGATATGAGTAGACATCTTAAAAGACAGCACCAGAAGAACGATCTCCACTATTGTTCAGAATGTGACTATAAGGCTGAACAGTTTCAGGATCTGGAAAATCATATCGCACTTCTCCATAACAAAGCTGATTCGCATCAATGCCTTGATTGTTCCTTTACTGCTCAAAGTCCCCAGGAGTTAAAAAATCACATTACAGCTCTTCATAAAGTCCAGCAGTGTTCTCTTTGTGAATACCACACCACTGATCTTCGTGACATGAATAAACATGTCAGGTCTATCCATGCTAAAGATAAACCATATTACTGTTCACAATGCAGCTTTAGAGCTGCTGTGGTAAGCAAGTTAAAAAGACATATAGTGGCCAAGCATCCTCTTGAGAAGCCTTACCATTGTCCAGATTGTGATTACAAAACAGCTAGTGAACGCAATATGAAAAGACATGCAGAGACCCAGCATCCTCATCAATGTGAAAAATGTGAATTCAAAACTCCACATTATCaagatttagaaaaacatattgCCACATTTCATACAGATTGCAAATCTTATTCTGAAGATGATGATTATAGAACAGACAGTAGTTATGAAATGGTGAAGCATTTGACTGCCAACCACCCAAAAGTCAAACTGCAAAAGTGTTCACTGTGTGATTATAAAACATCAATTCTTCGAGATTTTAGTAAACACACGAAAACTGATCATAAGAAAGACAAGCCTTTTCAATGCTCTCTTTGTGAGTTTTCAGCTGTTAAAGTTGCTATGCTAAAGAAACATACAATGGCCAAACATCCAAGAGAGACACCTTACAAATGTCctgattgtaattttaaaacagagaaTGAACGAACAATGGAAAGGCATTTTAGGAATACCCATTCTAAAAGAAAAGAATGTTCTGATTCTGATAGTAATATCGAACAGATTCAGGAGCCGAAAAAACTTTCAGTGGCCAAGAAAGTAAGTGCAAGTGATCCTGAacagaataatttgtttatcaatGCTGAACATCATGGATGCACGCACTGtgattttaaaactactaattttgTTCACTTAAATAGGCATATAAAGGCTATCCATGCTAAAGAAAAGCCTTACCAATGTTCTCAGTGCGGGTTCAGTACTGCAGAAGCAGTTATTTTGAAAAGGCACGTAATGTCGAAGCATCCAAAACAGCAAACCTATCAATGCCCAGATTGCAGTTATGAAACTGCTAGTGTTCATGAAATGAATAAGCATACTACTACAATCCATCCAAGTGATTTAGAAAAACCTATACACATTAACTTGACTGAGTCATGTAGTTCAAGTGGTGAACAACAGCAAGGAAAACCTCATCAGTATTTAAAATCTGATTACGTAACATCTTCTtctaatgaaatagaaaataatataaaaattcaacattctAGTAAACCTTCAAATATTGTTGATTCGGAACAGTGTATTAGTATTGAATGTAAGAAAGTAAAAGTTAACCAATGTGTGCATTGCGAGTACCAAACTTCTAATCCTCACCATTTAGTGAGACATGTTAGAGCTGTTCATGACAAAGAAAAACCATTCAAATGTCTGGAGTGTGAATTCAGTGCTGTGGaagctgtttatttaaaaagacataTGATGGCAAAACATCCTTTAGAGAAACCGTATCACTGCCCAGACTGTGATTTTAAAACAGCTAGTGAACGTAGTATGAAGAAACATTCAGAGAGCCAGCACCCTGTTATTAACCCCTCTCgatgtaaaaaatgtaaatacaaacCATCTTCTCTCTCAGATTTGAAAAAACATCTAATGGCTTTTCATAGTGATAAGGAACCAATTCgttgtaaaaattgtgaattcaTGACAGATAGTAGTTGTGAGCTtgaaaaacatatcaaaaactTACATTCTAAAGAAAAGCTGAAAAACTGTTCTCAGTGTAGATATACTTCACAAAATTGCAATGATTTAGACAAACATGTCATTTCAGTTCATAAAAACGGTTTAAATCAGcatattaagataaaaagtacgaaaaagaaaatttataatattaaaaaacctgTTTGCAAATTAAGATCTTCATCAGATAAACAAAAAGAAGGTTTGCCTTTGAATATTAAGggaaagaaaatttcaaatggCATGAAGTCAAAAGTGAAGTGCTTCAAGTGTGGACAGTGTGACTTTACAAGTGCATATAGTCGTAGTGTGAGAAGGCATGTGATGACAGTTCATAAGAAAGGTAAACCTTTCAATTGTCCTATGTGCAGTTTCAGTTCTGTTGAACTTAGCTGCTTGAGAAATCATGTTATGGTTCAACATTTTTAA
- Protein Sequence
- MEPLDPIFPAMARTHIKNEIKEEPEFSAHHVASPKKTEEEDKMAFTVVVDLHQKKLLIGDDNIPSQVFIKQELFEEGENIIEDGFFDEGHFPSDNIDLGIVKQEKEFVLEEPSVKYCFQARQETVEVLIQSPVDREVSVAKAALTIYSPPGKEQKDSVDDNIQATINGPTRKTSKIHQCLLCPYKTGRPDHLKRHQKVHLKDKPHKCSQCTYKTVEPVSLKKHMMLKHPPEKPYQCPKCQYKCLSERDMSRHLKRQHQKNDLHYCSECDYKAEQFQDLENHIALLHNKADSHQCLDCSFTAQSPQELKNHITALHKVQQCSLCEYHTTDLRDMNKHVRSIHAKDKPYYCSQCSFRAAVVSKLKRHIVAKHPLEKPYHCPDCDYKTASERNMKRHAETQHPHQCEKCEFKTPHYQDLEKHIATFHTDCKSYSEDDDYRTDSSYEMVKHLTANHPKVKLQKCSLCDYKTSILRDFSKHTKTDHKKDKPFQCSLCEFSAVKVAMLKKHTMAKHPRETPYKCPDCNFKTENERTMERHFRNTHSKRKECSDSDSNIEQIQEPKKLSVAKKVSASDPEQNNLFINAEHHGCTHCDFKTTNFVHLNRHIKAIHAKEKPYQCSQCGFSTAEAVILKRHVMSKHPKQQTYQCPDCSYETASVHEMNKHTTTIHPSDLEKPIHINLTESCSSSGEQQQGKPHQYLKSDYVTSSSNEIENNIKIQHSSKPSNIVDSEQCISIECKKVKVNQCVHCEYQTSNPHHLVRHVRAVHDKEKPFKCLECEFSAVEAVYLKRHMMAKHPLEKPYHCPDCDFKTASERSMKKHSESQHPVINPSRCKKCKYKPSSLSDLKKHLMAFHSDKEPIRCKNCEFMTDSSCELEKHIKNLHSKEKLKNCSQCRYTSQNCNDLDKHVISVHKNGLNQHIKIKSTKKKIYNIKKPVCKLRSSSDKQKEGLPLNIKGKKISNGMKSKVKCFKCGQCDFTSAYSRSVRRHVMTVHKKGKPFNCPMCSFSSVELSCLRNHVMVQHF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -