Hhal004224.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:34784-55100[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0042 0.17 11.9 3.0 1 23 315 338 315 338 0.96 2 19 0.0091 0.36 10.9 3.1 1 21 344 364 344 367 0.95 3 19 1.7 69 3.7 3.2 1 23 373 396 373 396 0.91 4 19 0.023 0.9 9.6 2.0 1 23 402 425 402 425 0.95 5 19 0.025 1 9.5 4.5 1 23 431 454 431 454 0.95 6 19 0.079 3.1 7.9 0.4 2 23 461 483 460 483 0.94 7 19 0.00048 0.019 14.9 2.3 1 23 489 512 489 512 0.97 8 19 0.011 0.44 10.6 1.7 1 23 519 542 519 542 0.92 9 19 0.21 8.2 6.6 0.2 1 23 548 571 548 571 0.96 10 19 0.0011 0.044 13.7 0.2 1 23 577 600 577 600 0.96 11 19 0.012 0.5 10.4 1.5 2 23 607 628 606 629 0.94 12 19 0.013 0.52 10.4 5.9 1 23 635 658 635 658 0.97 13 19 0.011 0.43 10.6 2.9 1 23 664 687 664 687 0.95 14 19 0.057 2.3 8.4 1.0 1 23 693 716 693 716 0.95 15 19 0.0034 0.13 12.2 1.8 2 23 723 745 722 745 0.96 16 19 0.25 9.8 6.4 4.4 1 23 751 774 751 774 0.95 17 19 0.0019 0.077 13.0 3.8 1 23 780 803 780 803 0.97 18 19 0.019 0.75 9.9 1.5 2 23 811 832 810 832 0.96 19 19 0.0031 0.12 12.3 4.8 1 23 839 862 839 862 0.95
Sequence Information
- Coding Sequence
- ATGATGAAGAAGGAGCCCGTGgaagatattacaatatCtcctgatataataataaaagaagaatatgAGGAGGATGATCCTTCCACTAATaatgTTTGGGTTGCCGAAGGACTAATGGAGGACGATGATGAAAAGTATTGCATCCCATCAACTTCAGATGACATACATGGCTAtcacagtaataataatgaggaTCAAGATCATGTCAGCATTAGCCTACTCAGTCAAAATGACATCTCATTCAGAGAGGATCAGTTTGATTCGGCTGCTGTACATGACTATGGTGACAGATATTATAAAACTTCAGAATATTACGATTCCACTTCTCTACCACAACTTGCTGCAAGAAAGGGAAAGCACTCTGAAAGTGGAAATCCCTCCCTATCGCCATACAAATACCAAGTCCTCTCAAGGAACTCACGAGTCCTTCgagaagaaaggaaaaataaacgaAACAGTGGCCAATGCTATATCACATCTAAAGGAAAACTAGTCAGGGGTCGCTCTTTCGTACCTCTAAAAAATTGTCGAAGCAAATGTAACACTAAAATCTTGCCAGAAATCCAAGccacaatatttaaagaatattggAACCAAGGAACACGTGACAAAAGAGTCTCATTTGTAGCTTCTTCAGTGGAGTTCCATCAACCTAAAGTGTCACGAAAGAGAAATGATGTGCCagaagacaagaaaaaaaatcgagtaGTCAgtaactctttttattttaacattaatggaGAAAGAATCAAAGTGTGTCGAGGTTGTTTTACATCAGTTCTCGATGAAACTAACATGTTTGTGACGTATGCGATTTCAGctgGATTAACAGAATTGAATTATGAAGAAGGGTCCATGGAAGCAGAAAAtgattctCTTACCATTGAAGAGGATGGAAGTGCCACTCCAAGCACGGgtGGTGAAATTCAACAGCAAAAGCTGCACAAATGTCCTTATTGTGACCATACCACTACATTTCCTTACAGCATCAAAGTCCACATAATATCAAAACATACTGATGAAAAGCCTTTCCAGTGTCCGCACTGTGATTATAAAGGAAAGTTTTCAGGGGCattaaaaaatcacattatGTGCAGTCACTCGAGTGATAAGCCTCACAAATGTCCTCATTGTAATTTCAGAGCTTTATTTCCAAGCACTGTGAGAAAACACATATCAAAAATACACACAGAACTGAAGGACCATCAGTGTGATTTCTGCCCCCATAAGGCAACATCTAGGAATCAGCTGAAAGCACACGTAATCAGTGAACATTCTTCAGAGAGGCCACACAAGTGCCCACATTGTGATTATAGTGCTGTACTTTCTACTGGTTTAAAAAGGCACATACATTATAAACACACACAGATGAAACCTTTGCAAtgccctcattgtgaatataaagcaATGTACAGTAATGGACTTAAAATTCACATAATGGCAAAGCATACAAAGGAGAAGCCCTTCCAGTGCAAGCAATGTCAGTTCAAAACTACAACAGCTAGTAGCCTCAAAACGCATGTGATGTCACAGCACGAAGTAAGAGAAAAGACACATCAATGTCCATATTGTGAGAACAAATATGTTATGAAAAGAAGCTTAAGAAGTCACATTTATGCCCAGCACAGCACTGACAAaccttataattgttcataTTGTGACTTTAAAACAGCTTGGCCCGGGAGTATAAAGGCACATATAATGACTTATCACACTAAAGAAAGGCCATTTCGATGTCCTCATTGCGAATATGGAGCTATAGATAACGCAACATTGAAAAAACATATAGCAATTTATCATACATTAGTGAAACCGCTCAAATGCCCTTATTGTGAGTTTAGAaccattaagaattttactttGAAAGGCCATATTATGGTTCATCACACTAAAGAAAAACCTTTCCATTGTACATATTGCGATTATAAAGCTACATATCATAGCAGTTTAAAAATCCATGTCAAAACTAGACATACCATGGAGAAGTTGTACTGTTGCCCACATTGTGATTTTTCTaccataaataatttcaaattgcaaGGACATATAATGGGTACACATACTAATGAACGGCCGTTTCAATGTTCATCTTGTGAATACAACACTGTTTATCGGAGTAGACTGAAAGAACATATACAAGCACGTCATTCAGCAACTAAGCCGTTACGGTGTCCACATTGCGACTTTGAAACCaggaaaaattatactttacaaGGACACATAATGTCTCGCCATACAAATGAGAAACCTTATCACTGTTCTATTTGTGACTACAAAGCGGTTCACCGTTGTAGGCTAAAAGAACATATGATGGCTGTCCATACCGATGAAAAACCTTATCAATGCAAGCACTGTGATTATAGAACTGTTTATCGCGGTAGTTTAAGATATCATGTCAAGTCTCAACACTCGACAGACAATACACCACTTCAGTGCCCTCACTGTGAGTTTACCACTTCGGCAAAGGTCGCTATGCGAAAGCATATCAAATTTCATATTAGTACTGAGAAACCATTTGAATGTTCACACTGTGGATTCCGGACTGTTTATCACACCaatttaaagaaacatataGTTAGGCAGCATATTAGTATCGATGAAAAAACTGATTTTACATCCCATACAGATGATAAGTCTTTAATTACCTTAGAAACATGA
- Protein Sequence
- MMKKEPVEDITISPDIIIKEEYEEDDPSTNNVWVAEGLMEDDDEKYCIPSTSDDIHGYHSNNNEDQDHVSISLLSQNDISFREDQFDSAAVHDYGDRYYKTSEYYDSTSLPQLAARKGKHSESGNPSLSPYKYQVLSRNSRVLREERKNKRNSGQCYITSKGKLVRGRSFVPLKNCRSKCNTKILPEIQATIFKEYWNQGTRDKRVSFVASSVEFHQPKVSRKRNDVPEDKKKNRVVSNSFYFNINGERIKVCRGCFTSVLDETNMFVTYAISAGLTELNYEEGSMEAENDSLTIEEDGSATPSTGGEIQQQKLHKCPYCDHTTTFPYSIKVHIISKHTDEKPFQCPHCDYKGKFSGALKNHIMCSHSSDKPHKCPHCNFRALFPSTVRKHISKIHTELKDHQCDFCPHKATSRNQLKAHVISEHSSERPHKCPHCDYSAVLSTGLKRHIHYKHTQMKPLQCPHCEYKAMYSNGLKIHIMAKHTKEKPFQCKQCQFKTTTASSLKTHVMSQHEVREKTHQCPYCENKYVMKRSLRSHIYAQHSTDKPYNCSYCDFKTAWPGSIKAHIMTYHTKERPFRCPHCEYGAIDNATLKKHIAIYHTLVKPLKCPYCEFRTIKNFTLKGHIMVHHTKEKPFHCTYCDYKATYHSSLKIHVKTRHTMEKLYCCPHCDFSTINNFKLQGHIMGTHTNERPFQCSSCEYNTVYRSRLKEHIQARHSATKPLRCPHCDFETRKNYTLQGHIMSRHTNEKPYHCSICDYKAVHRCRLKEHMMAVHTDEKPYQCKHCDYRTVYRGSLRYHVKSQHSTDNTPLQCPHCEFTTSAKVAMRKHIKFHISTEKPFECSHCGFRTVYHTNLKKHIVRQHISIDEKTDFTSHTDDKSLITLET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -