Hhal001087.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:50848-64693[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0025 0.1 12.6 3.4 1 23 130 153 130 153 0.95 2 18 0.00014 0.0055 16.6 1.0 1 23 159 182 159 182 0.96 3 18 0.021 0.83 9.7 2.3 1 23 188 211 188 211 0.93 4 18 0.14 5.6 7.1 9.4 1 23 217 240 217 240 0.96 5 18 0.0014 0.056 13.4 7.1 1 23 246 269 246 269 0.94 6 18 0.0038 0.15 12.1 1.3 1 23 275 298 275 298 0.96 7 18 0.0054 0.21 11.6 3.8 1 23 304 327 304 327 0.94 8 18 0.00082 0.033 14.2 1.1 1 23 333 356 333 356 0.95 9 18 0.35 14 5.9 2.4 1 23 362 385 362 385 0.93 10 18 0.27 11 6.2 2.0 2 23 392 414 391 414 0.95 11 18 0.011 0.45 10.6 7.9 1 23 420 442 420 442 0.97 12 18 0.2 8.2 6.6 2.0 1 23 449 472 449 472 0.90 13 18 0.3 12 6.1 0.3 1 23 478 501 478 501 0.90 14 18 0.00047 0.019 14.9 2.5 1 23 507 530 507 530 0.94 15 18 0.0032 0.13 12.3 0.3 1 23 536 559 536 559 0.97 16 18 0.024 0.97 9.5 0.6 1 23 565 588 565 588 0.96 17 18 0.015 0.59 10.2 0.4 2 23 595 617 594 617 0.96 18 18 0.019 0.77 9.8 4.0 1 23 623 645 623 646 0.93
Sequence Information
- Coding Sequence
- ATGGATGAAGCTGgtATGAGCAACTATGGTGTTTTTGTTAAAGAAGAAAATGCTGAAGGAACTGAACTTAATTATGGGCTTTTTCAtgtgaaagaagaagaaatacttATACCAGATCAtgATATGAGTGACTcccgtatttttataaaagaagaaaaggcAGATGATTCCTTAAATGCTGGCATGAAtaactcttttgtttttataaaagaagaaaaggcTGATGTAACTGGGCATAAATCTCCGGAAATGTTCCATGAAGGAGAGGAAGCACTGCTTCATAATGgtGCCAAGAATGTCCTCAGCAAGATTCAGGAGATCAGACAGTATGACTTAAAAAGTCAGATGAAAGTGGATTTAGCACCTCTTCAGTCTGGTGAGAAACCTTTTCTCTGTCATCATTGTGGGTATGAAACTGAGTACTacattgatttgaaaaaacatataaatactaATCATAAATATGAAGAGCATTATCAGTGCCCTGAGTGTGACTATAAAGTTATTAGaaagaattgtttaaaaatacacataatgGCTCGGCATACAGGTGAGAGACCTCATAACTGTCTTGATTGTGACTATAAGGCAGTAACAAGAGGTAAACTGAGAAGACATATTCTGGCATGTCATTCAGAAGAAAAGCCTCATCACTGTCCACACTGTGTATTCAAAACAGTAGACCTGAGTCACTTAAGGAAACATATAATAACCTGCCATACAAATGATAAGCCTCATCACTGCCCTCATTGTGACTACACGACAGTAACACAGAGTTATTTAAAAACGCATATAATGGCCTGTCATACCGGTGAGAAGCCTCATAgctgtcctcattgtgattataaagcaATATCAATCAGCAAgttgaaaatacatatattgtCCCTACATGAAAGAGAAAAACCTCATCAGTGCCCTCATTGTGAATACAGAGCGTCACAAGCCTGTACtttaaaaagacatataatTGCCCGTCACACAGAAGATAAGCCTTACAactgtcctcattgtgattataaatcagttactATGAGTTATTTGAAAGTACATGTAATTTCCAATCATACTGATGAAAAACCTTTTTCCTGTCCTCATTGTTCTTATAAAGCAGTAGaaatgtgtaaattaaaaagacatATAATTGCTTCCCATACTGATGAAAAGCCTCTTCACTGTCCTCATTGTAACTATAAAGCAGTtataatgagtaaattaaagttGCATATTATGTCTCAGCATAAAGGAGAAAAGCCTCACCACTGCCCTCATTGTGACTACAGAGCATCACAAGCCTGCACTTTAAAAAGACATTTATTGACCCATCGTACTGTTGAGAagactcatcaatgtcctcattgtgaccATAAAGCGTTaactatcaataatttaaaaattcatataatggcTGACCATACAGATGAGAAAAACCATCCATGTACTTACTGCGCCTTTTCAGCTGTAAcaataggtaatttaaaaacacatgtaACTGCCCAACATACTGAACAAAAGCCTCATCattgtcctcattgtgattacaGGGCATCACAAGCTGGTACtttaaaaagacatataatgGCACTTCATACAGgagagaagcctcatcaatgtcctcaatGTGAGTACAAAGGTGTTACCATTGGTAATTTGAAAATGCATATAATGATCAATCATAgaggtgagaagcctcatccaTGCCCTCACTGTGCCTACAAAGCAGCAGAAATGTGGAACCTGAAAAGACATATAATGGTTCGTCATACAGGTGAGAAACCTcttcaatgtcctcattgtgactaTAGAGCAgtaataatgagtaaattaaaaatacatattatgtcacagcataaaggagaaaaacCTCATCACTGCCCACATTGTGACTACAAAGCATCAGAAGCTGGTACTTTAAAAAGACATATAGTGGCCCATCATACAATTGAGAGTCCTAATTGCTGA
- Protein Sequence
- MDEAGMSNYGVFVKEENAEGTELNYGLFHVKEEEILIPDHDMSDSRIFIKEEKADDSLNAGMNNSFVFIKEEKADVTGHKSPEMFHEGEEALLHNGAKNVLSKIQEIRQYDLKSQMKVDLAPLQSGEKPFLCHHCGYETEYYIDLKKHINTNHKYEEHYQCPECDYKVIRKNCLKIHIMARHTGERPHNCLDCDYKAVTRGKLRRHILACHSEEKPHHCPHCVFKTVDLSHLRKHIITCHTNDKPHHCPHCDYTTVTQSYLKTHIMACHTGEKPHSCPHCDYKAISISKLKIHILSLHEREKPHQCPHCEYRASQACTLKRHIIARHTEDKPYNCPHCDYKSVTMSYLKVHVISNHTDEKPFSCPHCSYKAVEMCKLKRHIIASHTDEKPLHCPHCNYKAVIMSKLKLHIMSQHKGEKPHHCPHCDYRASQACTLKRHLLTHRTVEKTHQCPHCDHKALTINNLKIHIMADHTDEKNHPCTYCAFSAVTIGNLKTHVTAQHTEQKPHHCPHCDYRASQAGTLKRHIMALHTGEKPHQCPQCEYKGVTIGNLKMHIMINHRGEKPHPCPHCAYKAAEMWNLKRHIMVRHTGEKPLQCPHCDYRAVIMSKLKIHIMSQHKGEKPHHCPHCDYKASEAGTLKRHIVAHHTIESPNC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00165426;
- 90% Identity
- -
- 80% Identity
- -