Hhal000700.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:77681-95670[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 9.2 3.7e+02 1.4 0.1 5 23 184 203 183 203 0.76 2 14 0.0021 0.083 12.9 3.0 1 23 209 232 209 232 0.96 3 14 0.00032 0.013 15.4 1.2 1 23 267 290 267 290 0.97 4 14 0.024 0.97 9.5 0.8 1 23 296 319 296 319 0.94 5 14 0.0011 0.044 13.8 3.2 1 23 325 348 325 348 0.95 6 14 0.00028 0.011 15.6 4.2 1 23 354 377 354 377 0.97 7 14 6.7e-05 0.0027 17.6 1.2 1 23 383 406 383 406 0.95 8 14 0.0017 0.068 13.2 0.8 1 23 412 435 412 435 0.95 9 14 0.00064 0.026 14.5 3.7 1 23 441 464 441 464 0.95 10 14 0.0011 0.042 13.8 2.4 1 23 470 493 470 493 0.93 11 14 6.2e-05 0.0025 17.7 2.7 1 23 499 522 499 522 0.95 12 14 0.012 0.47 10.5 4.9 1 23 528 551 528 551 0.94 13 14 0.027 1.1 9.4 7.4 1 23 557 579 557 580 0.95 14 14 0.0014 0.055 13.5 4.9 1 23 586 608 586 609 0.94
Sequence Information
- Coding Sequence
- ATGGATAGAATCGgCATGAATAGTGTTGGAATTCCCATAAAAGAAGAAGTTATGGATGGAACTGAACCTAATGGTGGCAACAGCTTGGGAAGTTCTATAAAAGAAGAAGTTACTGATGATACAGtaggtGTGAATAGCTTAGGAATTTCTATAAAAGAAGAAGTTACAGAACAAACTGAACTCAATggcATGAATAGTGTGGGAATTTCCATAAAAGAAGAAGTTATGGATGGAACTGAACCTAATGGTGGCAACAGCTTGGGAATTTCTATAAAAGAAGAAGTTACTGATGATACATTAGgtgtGAATAGCTTAGGAATTTCTATAAAAGAAGAAGTTACAGAACAAACTGAACCCAATgATCTAACAATCAATATCAAAGAAGAGGAAAGACTTGATATTTACTACGGTGGCCACGATCATGTTAAACAGGAAGGAGAGCTACTTGTTCCAGATGATGATGCAGGAAACTCATTCACCCATTCAGATCAATTGAAAGCAAATATGGATTATAACATTCCTGGAATGTATCCTCATACTGATcatcctcattgtgaatataaatcagttggAATAGGTGTTTTAAAAAACCACATGATGGTCCGTCATACTGGTGAAAAGCCTTATCGATGTGCACATTGTGAATACAAAACGGCTGTACgtagtaatttaaaatctcATATAATGGCCTGTCATACAGGTCAGAAGCCTCATCAAGGTccacattgtaaaaataaatcagttaccataaataatttaaataaatataaaatggtccTCCACattggtgagaagcctcatcaatgtcctcattgtgaatacaAAACAGCTGTTCTTGGTAATTTAAAAGCACATATTATGTCTCGTCATACTGGTGAAAAGCcttatcaatgtcctcattgtgaatacaAAACAGCTGTACTTGGTCATTTAAAACCGCATATTATGGCTCGTCATACTGATGAAAAGCcttatcaatgtcctcattgtgaatacaAATCCGTTAGAAAAAGTGGTTTAAACCTACACAGAATGGCCTGTCATACTGGTatgaagcctcatcaatgtcctcattgtgattataaatcagttttccgaggaaatttaaataaacatataacaaCACGCCATACTGGtaagaagcctcatcaatgtccacagtgtaaatataaatcagttacaaaagataatttaaataatcacatAATGGCCCTCCACaatggtgagaagcctcatcaatgtcctcattgtgaatacaAAACAGGTGTACCTGGTAACTTAAAACTACATATTATGGCTCGTCATACTGGTGAAAAGCcttatcaatgtcctcattgtgaatacaAATCGGTTAGAAAAAGTGGTTTAAACCAACACAGAATGGCCTGTCACACTGGCatgaagcctcatcaatgtcctcattgtgattataaatcagttttcctaggaaatttaaataaacatataacagCACGCcatactggtgagaagcctcatcaatgtccacattgtaaatataaatcagttacaaaagataatttaaataatcacatAATGGCCCTTCATACTGCTGAGAAGCCTCATcattgtcctcattgtgaatataaatcagttggaaaaagttatttaaagaagCATATAATGGCTCGACATACTGGTGAAAAGCCTTATCAATGtgctcattgtgaatataaatcagttcaCAAACATCTTTTAAATAGACACATAACAGCCCATCATACTGGTATGaaacctcatcaatgtcctcattgtgattataaatcaattttccgaggaaatttaaataaacatataacagCACACCATACTGaCACATAA
- Protein Sequence
- MDRIGMNSVGIPIKEEVMDGTEPNGGNSLGSSIKEEVTDDTVGVNSLGISIKEEVTEQTELNGMNSVGISIKEEVMDGTEPNGGNSLGISIKEEVTDDTLGVNSLGISIKEEVTEQTEPNDLTINIKEEERLDIYYGGHDHVKQEGELLVPDDDAGNSFTHSDQLKANMDYNIPGMYPHTDHPHCEYKSVGIGVLKNHMMVRHTGEKPYRCAHCEYKTAVRSNLKSHIMACHTGQKPHQGPHCKNKSVTINNLNKYKMVLHIGEKPHQCPHCEYKTAVLGNLKAHIMSRHTGEKPYQCPHCEYKTAVLGHLKPHIMARHTDEKPYQCPHCEYKSVRKSGLNLHRMACHTGMKPHQCPHCDYKSVFRGNLNKHITTRHTGKKPHQCPQCKYKSVTKDNLNNHIMALHNGEKPHQCPHCEYKTGVPGNLKLHIMARHTGEKPYQCPHCEYKSVRKSGLNQHRMACHTGMKPHQCPHCDYKSVFLGNLNKHITARHTGEKPHQCPHCKYKSVTKDNLNNHIMALHTAEKPHHCPHCEYKSVGKSYLKKHIMARHTGEKPYQCAHCEYKSVHKHLLNRHITAHHTGMKPHQCPHCDYKSIFRGNLNKHITAHHTDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -