Hhal004634.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:123442-126923[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0015 0.061 13.3 0.7 1 22 479 500 479 501 0.90 2 17 0.0084 0.34 11.0 1.9 1 23 507 529 507 529 0.98 3 17 0.17 6.8 6.9 5.6 3 21 539 557 538 558 0.94 4 17 0.11 4.4 7.5 0.4 2 23 587 609 586 609 0.95 5 17 3e-05 0.0012 18.7 4.4 1 23 616 638 616 638 0.97 6 17 7.9e-05 0.0032 17.4 6.3 1 23 647 670 647 670 0.96 7 17 0.18 7.3 6.8 0.1 2 23 681 703 680 703 0.88 8 17 0.019 0.74 9.9 2.0 1 23 724 746 724 746 0.97 9 17 6.2 2.5e+02 2.0 3.5 1 23 752 774 752 774 0.97 10 17 0.36 14 5.9 2.0 1 23 793 815 793 815 0.94 11 17 6.6 2.6e+02 1.9 2.7 1 23 821 844 821 844 0.83 12 17 8.5e-06 0.00034 20.4 0.8 1 23 859 881 859 881 0.98 13 17 1.7e-06 6.6e-05 22.6 0.5 1 23 887 909 887 909 0.98 14 17 0.0036 0.14 12.1 0.4 1 23 915 937 915 937 0.98 15 17 0.00039 0.016 15.2 3.3 1 23 943 965 943 965 0.98 16 17 1e-05 0.0004 20.2 0.9 1 23 971 993 971 993 0.99 17 17 0.0012 0.047 13.7 3.5 3 23 1001 1022 1000 1022 0.93
Sequence Information
- Coding Sequence
- ATGCCGAAAAAGTGGGCTTCTATTGTTGTGAGTTTAGAAACgggggaaaaaatgaaattgatagtAAAAAACAATGCTGGAGAAACTGTTTCTGTTGAATTAAATGCTATAGATACTTTCaaagatttgaaagaaaaagtgGAAAGGAAGATAGGTTTATCACTTGATCTGAAAGATATAGCCATAAAAGGAAAGAAGATAACGGAATCACAACTTGTCACAGATTATTTTGGTTGTTACCTTCCTACAATGGAACCGCcccaatcaaaaatattttgtgtcgTACCTGGTTGCAAAAATACTAAAGAAAGAAATCCTGATAAAGTGTTCTTCGAATTCCCTTCTGAAGAAATAAGATGTCATCAATGGGTTTTATATTGCCAACGTTTAGCTGTAGGCTCACGTAAAAAACGACTTCACATAACTCCAGAATCCACTATTTGTAGTGACCATTTTCGACCAGATCAGTtcgtaaaaaacacaaatactcTTTTGAAAAGAACAGCTGTTCCCTGCatgaaatttttcattgatGAATTGAAAGAACCAAATCAGTATTCTGAAGGCTATGGTTTTACCCACACTAATTATGTTTCGTTGCTTACTGAACCAAGttccaattgtttaaaaaatcatcaagtCAGATTATGTAGGCTTTGTGCTTCAACAAGTGAtgaattttatctaatatttgatgattttggaaaagaaatgaaaatagctgaaaaaataaatttgtgtttgCCTCTCAGTGTTCAGATTACAGATGAATTGCCTAAACAGATATGCAAAACATGTTTCAAAGAgcttaatgatttatttgaaatggcAGATCAATGTAGCATATCTCagcataatataataactataagtcAAAGTAATAGTTATAATTGCTCTTCATTTCCAATTTTGTTAGAAACTCATGGAGTATTTGAAGAtgagaaaaactattttgagaCAGTTTGCCCTTTATGTGATGATGGGAAACTAAGCAATTGTCCCTCAGATAATTTCAATAACATGAATAAAAGTGGAAATAGCAATGGTTTTCCTTATGAAACTAGAGGTAACTTTGTTTGTCATGATCTGTATTTGCTAGATGAATATAATCACCTCATTAATAGTAGTgatattcataaatttgaaGGGAATGATACATCTTTCGCTTTAAGCAGTGAATTGCAAACCAGAATGGAAGTTAGCACCCTATGTGAGCCAATACTAACTCATAGAGATCCTCTTAAAATAGAAGAGAAGTCTCCAATTCATGAAACCGAGGATATAATGAACTCTTTCTCTCAACTAGTAAGCCCCCTGGGCATAGAAGAAATCAATGACAGCAGTCTTAAACAATCTTTTTTGCCTGAATCAGACCCTTTAAATACAGAAAACAGTAACAAAATGGGCTACGAACAACTGGAGAAAGGATTGATATTCATTTGTCGAATTTGTGCTAAAGAGTTTTCTAAAAGCTCTGAACTTCTTAGGCATTCTTATGATCATTCATGCAAAAACTTTTATCAATGTTGTgcttgtgtaatttttttttctagcaattATGATTTAGAACAACATTTACAGCAACACTTGTTGCTAGAAGACATTGTTGCATTCTGTAATTATTGCCATGAatgttttaattcttctttGCTGTTAGAAagtcatttatgttttaaagaaaataaatgtaccaTTTGTTATACTAATCTACGAGCTGATTTCCAAAGTTGTGAGCACTTAAAATTTTCTGGCAATACAAGATGCAATATCTGTTACAAGATTTTAGGGGATGACATAAAACTTCAGAAACACATGCTTTACACTCATTCCTCATCAAGCAGATCTCATTGTTGCGAAGAATGTGGGAAAGTGTTCAAATCAGAAGCATCCATGAAATATCATCAGAGGACTCATCAAAATAACGATGGAGCTAAGCCATATTGTTGCAGTAGATGTGGTAAATGTTTCATGCGAAAATCAATGTTGATCAATCATATGTCTTCCACACATACCAATATAGTTGCTGAAACATCTTGTATTACTTGTAAGTTTTGCAATGAAACATTTCCTAACACAGATGTTGCAGTAACTCACATGGATAATATTCATAAAGTGGAATCAATGGAGAATACGAATTACAGTTTTGAAATGCAAACTGTTAAGAGAgtatttatttgtgaattttgtGAACGTTGTTTTGTTGAAGATTCTGTACTAAATAAGCATCGAGAAAAACATCCATCAGAGAAACCTTATGAGTGTAAATTGTGTTGCAATACCTTTATCTCAGAAGAAGAACTTGGCAACCATAAGCATTCTCatagaaatgatataaaaacaactgaATATTCAGTAGATTTCACTTTACCAAAGACATATTTGTGTGAGTATTGTGAAAGATGTTTTCTCAACCAAATCAAATATTCAGAACATTTGAGTATTCATTTTGGGCCAGACCCATATAAGTGCAAGCATTGCcctctaataaaatttcaaactcTTCATGAGGCAGTAGAGCACAGAGAGAGACATGATATGTTACCTGAAACAGAAGAGTTTGATTCCTTTCGTCCTTATGATTGCCATTACTGTAGTAAAACTTTTGCTATAGAAGATGCATTAATAAAACACATAAGAATGCATACAGGAGAAAAGCCATTCATATGTGATCAGTGTGGTAAAGGTTTTTCACAAAGCTCTGGTTTATACACTCATCAAAAGGTCCATTCTACAGAAAGACCATATTCCTGCTCAGTTTGCCcaagaacatttaaaattaaaggagaTCGAGATGTTCATGTCAGAAAACATTCAGGGGATCGTCCATATAAATGTGAATATTGTGGGAAAGCTTTCATGACTCAGCATGTTTATAGCCAGCATAAGAAAATCCATACTGGAGAAAGGCCTTATAAATGTGATGTTTGTGGGATAGCCTTTCGAAGATCTCATGTTTTAACAGTTCACAAAAGGATTCATACTGGAGAGAAGCCGAACATTTGTCACATTTGTGGAAAAAGTTATCGACAGAAAGGAGACATGTTGAAGCATTGTAGGGTTCAACATGGAATTTTTAATACCAAAAAGGTTGTAGCAATGCTCTAG
- Protein Sequence
- MPKKWASIVVSLETGEKMKLIVKNNAGETVSVELNAIDTFKDLKEKVERKIGLSLDLKDIAIKGKKITESQLVTDYFGCYLPTMEPPQSKIFCVVPGCKNTKERNPDKVFFEFPSEEIRCHQWVLYCQRLAVGSRKKRLHITPESTICSDHFRPDQFVKNTNTLLKRTAVPCMKFFIDELKEPNQYSEGYGFTHTNYVSLLTEPSSNCLKNHQVRLCRLCASTSDEFYLIFDDFGKEMKIAEKINLCLPLSVQITDELPKQICKTCFKELNDLFEMADQCSISQHNIITISQSNSYNCSSFPILLETHGVFEDEKNYFETVCPLCDDGKLSNCPSDNFNNMNKSGNSNGFPYETRGNFVCHDLYLLDEYNHLINSSDIHKFEGNDTSFALSSELQTRMEVSTLCEPILTHRDPLKIEEKSPIHETEDIMNSFSQLVSPLGIEEINDSSLKQSFLPESDPLNTENSNKMGYEQLEKGLIFICRICAKEFSKSSELLRHSYDHSCKNFYQCCACVIFFSSNYDLEQHLQQHLLLEDIVAFCNYCHECFNSSLLLESHLCFKENKCTICYTNLRADFQSCEHLKFSGNTRCNICYKILGDDIKLQKHMLYTHSSSSRSHCCEECGKVFKSEASMKYHQRTHQNNDGAKPYCCSRCGKCFMRKSMLINHMSSTHTNIVAETSCITCKFCNETFPNTDVAVTHMDNIHKVESMENTNYSFEMQTVKRVFICEFCERCFVEDSVLNKHREKHPSEKPYECKLCCNTFISEEELGNHKHSHRNDIKTTEYSVDFTLPKTYLCEYCERCFLNQIKYSEHLSIHFGPDPYKCKHCPLIKFQTLHEAVEHRERHDMLPETEEFDSFRPYDCHYCSKTFAIEDALIKHIRMHTGEKPFICDQCGKGFSQSSGLYTHQKVHSTERPYSCSVCPRTFKIKGDRDVHVRKHSGDRPYKCEYCGKAFMTQHVYSQHKKIHTGERPYKCDVCGIAFRRSHVLTVHKRIHTGEKPNICHICGKSYRQKGDMLKHCRVQHGIFNTKKVVAML
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01298448;
- 90% Identity
- iTF_00763905;
- 80% Identity
- iTF_00763905;