Hhal001172.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:266800-287321[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00031 0.012 15.5 3.4 2 23 163 185 162 185 0.97 2 20 0.0045 0.18 11.8 1.8 1 23 191 214 191 214 0.97 3 20 0.015 0.6 10.2 4.3 1 23 220 243 220 243 0.97 4 20 0.001 0.041 13.9 3.7 2 23 250 272 249 272 0.93 5 20 0.0094 0.37 10.8 3.5 1 23 307 330 307 330 0.96 6 20 0.0024 0.094 12.7 0.9 1 23 336 359 336 359 0.96 7 20 0.026 1 9.4 10.0 1 23 365 388 365 388 0.94 8 20 0.039 1.6 8.9 12.4 1 23 394 416 394 417 0.95 9 20 0.0071 0.28 11.2 3.1 1 20 423 442 423 446 0.95 10 20 0.032 1.3 9.2 5.6 1 23 452 474 452 475 0.95 11 20 0.0041 0.16 12.0 4.3 1 23 481 503 481 504 0.95 12 20 0.017 0.66 10.0 5.2 1 23 510 533 510 533 0.95 13 20 0.008 0.32 11.0 1.6 1 23 539 562 539 562 0.97 14 20 0.026 1 9.5 4.4 1 23 568 590 568 591 0.95 15 20 0.008 0.32 11.0 0.2 2 23 598 620 597 620 0.94 16 20 0.0015 0.058 13.4 0.2 1 23 626 649 626 649 0.97 17 20 0.0097 0.39 10.8 3.1 1 23 655 678 655 678 0.96 18 20 1.9 76 3.6 2.1 1 23 684 707 684 708 0.88 19 20 0.00065 0.026 14.5 2.0 1 23 713 736 713 736 0.98 20 20 0.001 0.041 13.9 3.9 1 23 770 793 770 793 0.97
Sequence Information
- Coding Sequence
- ATGGCTAAAAgtcTAAATTATCATGATGttacaataaaagaagaaatgactGATGGGCCTacaattaaagaagaaatgacTGATGAGCCtacaataaaagaagaaatgactGATGAACCtacaataaaagaagaaataactgATGAATCTGAGTCTTCTTGTAGTCTAATTAGTTGTGGTGttacaataaaagaagaaatcaaaGAGGAAACTGAGTCTAATTCTCTCACACTTGATATAAAAGAGGAGGacaatcaacaaatttactatgATGGGCTAGTTCATGTGAAGCAAGACGAAGATGTAATTGTTCCTGATGAAGCTGCCACAATCATTATCAAAGAAGAGGAAGGATCGCCTATTTATTTAGgTTCCGAAAATACTGTCAAGAACAAAGAAAAGGTCCAAAAGAATGGTATGAAACCTAAAATTTATGTTGATTCGAAGAAACTTGTTAAATCTTACCTTAAAGATGTTGAGCGTCTTCAGTGTCCTCACTGTGACTTTAAGACAACAAAGCTACGTAATTTAAAAAGTCACATAAACACCCGTCATATTCATAATAAGCCATACAGATGCCCTCATTGTGAACATAAAGCTGTTGCaagtaatcaattaaaaaaacatataatgtccattcatacaggtgagaagcctTTTAAATGCTTTCATTGTGACTATAAGTCCAcatataaaagtgtattaaaatatcatattatatccTCTCACATAGGCGTGAAGTCTTGtgaatgtcctcattgtgactataaaacaacaaaactctattatttaaaaaaacatataatggcaCTTCATAAAAGTCACAGGTTCCACCTATGTCCTCAATGTTGTTATGAAGGAGTAGACAAAAAATCTATGAAGGAACATATCGCAACCCGTCATCCACCTAAGAAGTTTCATCAATGCacttattgtgattataaaacAGGAACtactactaatttaaaatatcacacTATGATCAATCATACTGGTGAGAAACCTCATAAATGTACTCAGTGTGATTTTAAAGCAGCAGtagcttctaatttaaaaaatcacatcaTCTCCCGCCACACTGATGAGAAGCCTCataaatgtcctcattgtgaccATAGAGCATCTAGACCTCATCATTTAAAAAGTCATATCCTTGCATGTCATACAGCTGAGAAGCCTCATAAATGCCCTCATTGTgaccataaaacaaaaagagctTGCCATTTAAGGAATCACATAATGGCCCATCATACACATGAAAGACCTTATAAATGTTCtctttgtgaatataaatcaacaaCCGTCAGTAACTTGAAAAATCATATACTGTGCCGCCACAAAGACGAGAAACCTCATAAATGTTCTTATTGTGACTTCAAGACATCACTACTAAGTACATTAAAATACCACATTAAGGCCCATCATACAGACCAGAGGTCCCatcagtgtcctcattgtgactaCAAAGCAGTTACAAAAACTGGTTTAAATGTTCATGTACGGTTCCATCATAGgcgtgagaagcctcatcaatgcaCTCATTGTGACTTTAAGACTTCAAAAACtcgtgatttaaaaaatcacataatGGCTCGTCATACAGGTAAGAAGCCGTATCAATGCTTTCATTGTGACTATAAATCATCAGGGATTGAGAGtttaaaaagtcatataatGTATTGGCATACAGATGAAAAGCGTCATAAATGTCCACAGTGCAAATACAGCGCTGTTCAAATATCTTGTTTAAGAAATCATGTAATGGTCCATCATATAGGTGTGAAACCAATCAAATGCCCTCATTGTGATTTTAGTACAGTAGCAACTCCTTAtttaaaaagacatataatgGCCATTCATAAAGGTGAGAAGCCTTACAAATGCAATGATTGTGACTACAAATCAGCTGGAATGACAGCTTTGAAAAATCACATAATGGTTAGGCATACAGGTGATAGGCCTCATAAATGTCCTCATTGTAAATACCGAGCAACTCAACCAAGTTCTGTAAAATACCATGTAATGGTCCGTCATACAGGTGAAAAGCCTCATAAATGCCCTCACTGTGAGTACAGAGCAGTATTGAAGAGTTTCATaggaaaacatataataatagccCATCATACagataaaaaacatcaatgccCTGATTGTGATTTTAAAACTGCACATGCAAATTCTTTAAAAggacatataaatacatatcacACAAAGAATAAGTATGCTCGGGTTCCTCATCAAGATAAAACAGTAAgaaaagatgttttaaaaaaacataaaattgctTGTCGTCTAGGTGAGAAGTCTTTTCAATGTCATCATTGTGATTATAAGACAGTGACCTTTAGTGTATTGAAAAGACATATTATTGTGAATCATATATAG
- Protein Sequence
- MAKSLNYHDVTIKEEMTDGPTIKEEMTDEPTIKEEMTDEPTIKEEITDESESSCSLISCGVTIKEEIKEETESNSLTLDIKEEDNQQIYYDGLVHVKQDEDVIVPDEAATIIIKEEEGSPIYLGSENTVKNKEKVQKNGMKPKIYVDSKKLVKSYLKDVERLQCPHCDFKTTKLRNLKSHINTRHIHNKPYRCPHCEHKAVASNQLKKHIMSIHTGEKPFKCFHCDYKSTYKSVLKYHIISSHIGVKSCECPHCDYKTTKLYYLKKHIMALHKSHRFHLCPQCCYEGVDKKSMKEHIATRHPPKKFHQCTYCDYKTGTTTNLKYHTMINHTGEKPHKCTQCDFKAAVASNLKNHIISRHTDEKPHKCPHCDHRASRPHHLKSHILACHTAEKPHKCPHCDHKTKRACHLRNHIMAHHTHERPYKCSLCEYKSTTVSNLKNHILCRHKDEKPHKCSYCDFKTSLLSTLKYHIKAHHTDQRSHQCPHCDYKAVTKTGLNVHVRFHHRREKPHQCTHCDFKTSKTRDLKNHIMARHTGKKPYQCFHCDYKSSGIESLKSHIMYWHTDEKRHKCPQCKYSAVQISCLRNHVMVHHIGVKPIKCPHCDFSTVATPYLKRHIMAIHKGEKPYKCNDCDYKSAGMTALKNHIMVRHTGDRPHKCPHCKYRATQPSSVKYHVMVRHTGEKPHKCPHCEYRAVLKSFIGKHIIIAHHTDKKHQCPDCDFKTAHANSLKGHINTYHTKNKYARVPHQDKTVRKDVLKKHKIACRLGEKSFQCHHCDYKTVTFSVLKRHIIVNHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -