Hhal012163.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:138266-151019[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0093 0.37 10.8 1.0 1 23 141 163 141 164 0.95 2 17 0.18 7.1 6.8 5.1 1 23 197 220 197 220 0.96 3 17 0.0017 0.067 13.2 4.9 1 23 226 249 226 249 0.98 4 17 0.9 36 4.6 4.8 1 23 255 278 255 278 0.94 5 17 0.0043 0.17 11.9 0.2 2 23 285 307 284 307 0.95 6 17 0.0002 0.0078 16.1 2.7 1 23 313 336 313 336 0.96 7 17 0.0085 0.34 11.0 1.1 1 23 342 365 342 365 0.95 8 17 0.035 1.4 9.0 1.4 3 23 373 394 372 394 0.95 9 17 0.00012 0.005 16.7 1.0 1 23 400 423 400 423 0.97 10 17 0.0097 0.39 10.8 1.3 1 23 429 452 429 452 0.95 11 17 0.00024 0.0097 15.8 2.3 1 23 458 481 458 481 0.96 12 17 0.02 0.78 9.8 0.6 1 23 493 516 493 516 0.93 13 17 0.0016 0.066 13.2 3.6 1 23 522 545 522 545 0.95 14 17 0.0026 0.1 12.6 0.1 1 23 557 580 557 580 0.94 15 17 0.00068 0.027 14.4 3.6 1 23 586 609 586 609 0.96 16 17 0.0058 0.23 11.5 7.7 1 23 615 638 615 638 0.97 17 17 0.00055 0.022 14.7 5.1 1 23 644 667 644 667 0.97
Sequence Information
- Coding Sequence
- ATGAAAGAtatagaagaagaaggaattCCTGAAATCTATTATGGTGAAAATGTTCATGTCAAGCAAGAGGAAGAGGTTATTTTCTCAGATgaagATATAAGTAACtctagtattataataaaagaagaaattattggaatTAAGACTAAGTCCTCCTtactcAAGAATGATATTAAAGAAGAAGTAATACAAGAGTTCGATtacgaTGTGAGTAACTCTGGTATAtcaattaatgaagaaataactAACGAGACTGATTTCTCTGtttccaTGAAAGACATCAAAGAAGAAGGAGTTCCTGAAATCTATTATGggaCCATAGATTCTGTTAACCAGGCTAAGGAGATCAAACAGTATGGTTTGGAATCTTCGATTAACATCGGTTTGAAGGAAGGCATGTCTAGTACTGCTGGGAGCCCTCATAAATGTCCTtcttgtgaatataaaattgtagaaaaaagtCTGTTAATAAGACATATAATTGCACATCATAGAAATCGGAAAGAAAAGAGCTCTTTTTGTGAATATGAAACaatatcttctaatttaaaacatcATACAATGCCCTGCCATAAAGATGAAAAGATTTATCAATGtcatcattgttattataaagcagaaaaaaaaagttatattaagcAACATATTAAGGCACTTCATACTGATGAGAAGCCTTATAAGTGTCATCATTGTGAATATAGAGCAAAACTAAAGGGCAATATGAAGAGACACATAATGACCCTTCATACTGGTGTGAAGCCTCATAAGTGTCCTCATTGCAATTATAAAGCAAGAGAAATTAATACCTTGAAAGGTCATATAATGCACCGTCATACCAGTAAGAAGCTTCTTAGTTGTCCTTTTTGTGACTTTAAAACAGCAACAGGGAGCTATTTGAAAGTACATATAATGTCTCTACATATTGGTGAGAAGCGTCATAAATGTCCCCATTGTGACTTTAAAACAGCAACAGAGAGTTATTTGAAAGCACATATAATATCCCGTCATACTGGTGAGAAGCGCCATAATTGTCCTCACTGCGACTTCAAAGCAGTAGGAGCTAGTTATTTGAAAGTACATATATTGTCCCGTCATAAAACTGAGAAACTTCGTCATTGTCCTCATTGCAACTTTAAAACAGCAATAGCGAGTTATTTGAATGTACATATAATGTTGAATCATACTGGGGAGAAGCGTTATAATTGTCCCCATTGCGACTTTAAAACAGGAAGAGCgagttatttgaaaatacatataatgtCTCTTCACGCTGGTGAAAGACAATTTAATTGTCCTTATTGCAACTTCAAAACAGTAGCTGCGAGTTGTTTGAAAGTACATATAAATTTGCGTCATAATGGTGAGAAGCATCATAATTGTCCCCATTGTAACTTTAAAACAGCAAGAGCAAGTTATTTGAAAGTACATATAATGTCTGTTCACAATGGTGAAAGTCCACACACTGGTGAAAGACtatttaattgttcttattGTGACTTCAAAACAGTAGCCTCGAGTTATTTGGAAGCACATGTAATGTTCCGTCATAATGGTGAGAAACCTCATCATTGTCCTTATTGTGACTTTAAAACATCAACAGAAAGTTacttgaaattacatataacgTCCATTCACAATGGTGAAAGACCACACACTGGTGAAAGACTATTTAATTGTCCTTATTGTGACTACGAAACAGTAGCCGCGAGTTCTTTGGAAGTACATATAATGTTCCGTCATAATGGTGAGAAACCTCATCATTGTCCTTATTGTGACTTTAAAACATCAACAGAAAGTTACTTGAAATTGCATATAATGTCCCTTCACACTGCTGAAAGGCCATATTGTTGTCCTTAttgcaattataaatcaaaaaaaagatttcatttGACAAGACATGTAAAAAGCCTTCATACTGGTGAAAGGCCTCATAAGTGTCCTTATTGCGAATATAAAGCAAGACGAAGAGAGCATCTGAAAAAACATGTAAAGAGCCTTCACACTGGTGAGAACTCCCAGAATCACGAGTAG
- Protein Sequence
- MKDIEEEGIPEIYYGENVHVKQEEEVIFSDEDISNSSIIIKEEIIGIKTKSSLLKNDIKEEVIQEFDYDVSNSGISINEEITNETDFSVSMKDIKEEGVPEIYYGTIDSVNQAKEIKQYGLESSINIGLKEGMSSTAGSPHKCPSCEYKIVEKSLLIRHIIAHHRNRKEKSSFCEYETISSNLKHHTMPCHKDEKIYQCHHCYYKAEKKSYIKQHIKALHTDEKPYKCHHCEYRAKLKGNMKRHIMTLHTGVKPHKCPHCNYKAREINTLKGHIMHRHTSKKLLSCPFCDFKTATGSYLKVHIMSLHIGEKRHKCPHCDFKTATESYLKAHIISRHTGEKRHNCPHCDFKAVGASYLKVHILSRHKTEKLRHCPHCNFKTAIASYLNVHIMLNHTGEKRYNCPHCDFKTGRASYLKIHIMSLHAGERQFNCPYCNFKTVAASCLKVHINLRHNGEKHHNCPHCNFKTARASYLKVHIMSVHNGESPHTGERLFNCSYCDFKTVASSYLEAHVMFRHNGEKPHHCPYCDFKTSTESYLKLHITSIHNGERPHTGERLFNCPYCDYETVAASSLEVHIMFRHNGEKPHHCPYCDFKTSTESYLKLHIMSLHTAERPYCCPYCNYKSKKRFHLTRHVKSLHTGERPHKCPYCEYKARRREHLKKHVKSLHTGENSQNHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -