Hhal001707.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:17056-29212[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0035 0.14 12.2 2.9 3 23 107 128 105 129 0.92 2 17 0.00032 0.013 15.4 0.3 1 23 135 158 135 158 0.94 3 17 0.0066 0.26 11.3 4.1 1 23 164 187 164 187 0.96 4 17 7.3 2.9e+02 1.7 6.2 1 23 193 216 193 216 0.95 5 17 0.00027 0.011 15.7 0.8 1 23 222 245 222 245 0.97 6 17 0.011 0.46 10.6 6.1 1 23 251 273 251 274 0.96 7 17 0.00015 0.0058 16.5 0.2 1 23 280 303 280 303 0.97 8 17 0.024 0.96 9.5 1.2 1 23 367 390 367 390 0.97 9 17 0.025 1 9.5 5.7 1 23 396 419 396 419 0.97 10 17 0.0012 0.046 13.7 5.4 1 23 425 447 425 448 0.95 11 17 0.00014 0.0057 16.6 2.1 1 23 454 477 454 477 0.95 12 17 0.00085 0.034 14.1 5.6 1 23 483 506 483 506 0.97 13 17 0.097 3.9 7.6 2.4 1 23 512 535 512 535 0.96 14 17 1.8e-05 0.0007 19.4 2.0 1 23 541 563 541 564 0.96 15 17 0.0067 0.27 11.3 3.4 1 23 570 592 570 593 0.95 16 17 0.0067 0.27 11.3 3.0 1 23 599 621 599 622 0.95 17 17 2.7e-05 0.0011 18.8 0.9 1 23 628 650 628 650 0.98
Sequence Information
- Coding Sequence
- atggataaaatagGTttgaatataaaagaagaaatggcAGATGAAACTGGATCTGCTTTTGCTACAACTGATGTCACAGAAGAGAAAGGGCCACTGATTTATTACGatGGGCTCGTTCATGTGAAACTGGAAGAAGAGCTGCTTATCCCAGATGATGGTGCCAAGGATTCTGTCATTGAGAAGAAGAATAACATGAAAGATGAAAAGTGCATGGAttacaagaaatttaataagCCCCATCAAGAAGGTCCTCATTTTGAGTATGAAACTAGCAAATATACAATTACACATCAAGAAGATAAGAAAAGTCAACTAAATTGTTCTTTTTGTGAGTTTAAAACATATGACAAtccattcaatttaaaaagacATATGATGAGCCATCATACTGGTGAGAGGCcttatcaatgtcctcattgtccATATAAAGCTGTGCAATCAGGTActttaaaaacacatataatagcccgtcatacaggtgagaagccatatcaatgtcctcattgtgagtATAAATCAGCGGATTCTTCATGTATGAAAACACATATATTGTACCGTCATACAGAAGATAAACCTCatcagtgtcctcattgtgagTATAAAGCAGTAAAATTGTGCCATATAAAAGAACATGTAATGAGACTtcatacaggtgagaagccttttcagtgtcctcattgtgactaTAAAGCAGTAGAAAAGGGCCAActaaaacaacatataataaGCCGTCATACTGGTGAGAGGCCTtttcaatgtcctcattgtgaatatagaGCAATAATAAAAGGCCACTTAAAACATCACATAATGTCTCATCACACAGGTGAAAGGCCTTATCAGTGTCcttattgtgaatataaagcaGTACAATCAGgtactttaaaaatacatataaggGCCCGTCATACAGGGGAGAAGccccatcaatgtcctcattttGAGTATAAATCAGCTacttttggaaatataaaaaaacatataatgagcTGTCATACCGATGGGAAGCCTCATAAAGATTCTCATCGTGATTACAAATCAGCTAAATCTATAGATTTAAAAAGACATACAATGGGTCATTGTACAGATGAGAAACCTTATAAATGTCCCCATTGTGAGTATAAAGCAGTAAGATTAGGttttataaaacaacatataatgAGCAGGCATACAGGTGAGAAACCTCaccaatgtcctcattgtgagtATAAATCAGTTACTTttggaaatgtaaaaaaacatataatgagcTGTCATGCAGGTAAGAAGCCTCATCAGTGTCCTTATTGTGAGCATAAATCAGTGGATTCTTCAAGTATGAAAAGACATATAATGAGCCATCACACAgctgagaagcctcatcaatgtcctcattgtgattataaatcagtgacatctatagaattaaaaagacatataatgGGCCGTCATACAGGAGAGAAGCCTTTTCAGTGTCAccattgtgattataaagcaGTACAAAAGGGTCAATTAAAACATCATATAATATCCCGGCAcacaggtgagaagcctcataaatgtcctcattgtgagtACAAAGCAGTGAGATTAGGTCgtatacaaaaacatataatgagCCGTCATACAGGTGAGAAACCTTTTCAGTGTCcttattgtgaatataaagcCGTACAAAAGAGCCaattaaaacaacatataatgTCCCACcatacaggtgagaagcctcataaatgtccttattgtgattataaatcagtaagttctatttatataaaaacacataTAATGAGCCATCATACAGGTGAGAAACCTCATCAATGCCCTCATTGTGAGTATAAAGCAGTGCAAATAGgtactttaaaaatacatataatgagACATCATACTGGCGAAAAGCCTTATCAATGTccttattgtgattataaatcagttctTTCTACTAATTTAAAAAGACATTTGTTGAGCCATCTCACTGCTGATAAACCTTTTCAATGTTCTCAATAA
- Protein Sequence
- MDKIGLNIKEEMADETGSAFATTDVTEEKGPLIYYDGLVHVKLEEELLIPDDGAKDSVIEKKNNMKDEKCMDYKKFNKPHQEGPHFEYETSKYTITHQEDKKSQLNCSFCEFKTYDNPFNLKRHMMSHHTGERPYQCPHCPYKAVQSGTLKTHIIARHTGEKPYQCPHCEYKSADSSCMKTHILYRHTEDKPHQCPHCEYKAVKLCHIKEHVMRLHTGEKPFQCPHCDYKAVEKGQLKQHIISRHTGERPFQCPHCEYRAIIKGHLKHHIMSHHTGERPYQCPYCEYKAVQSGTLKIHIRARHTGEKPHQCPHFEYKSATFGNIKKHIMSCHTDGKPHKDSHRDYKSAKSIDLKRHTMGHCTDEKPYKCPHCEYKAVRLGFIKQHIMSRHTGEKPHQCPHCEYKSVTFGNVKKHIMSCHAGKKPHQCPYCEHKSVDSSSMKRHIMSHHTAEKPHQCPHCDYKSVTSIELKRHIMGRHTGEKPFQCHHCDYKAVQKGQLKHHIISRHTGEKPHKCPHCEYKAVRLGRIQKHIMSRHTGEKPFQCPYCEYKAVQKSQLKQHIMSHHTGEKPHKCPYCDYKSVSSIYIKTHIMSHHTGEKPHQCPHCEYKAVQIGTLKIHIMRHHTGEKPYQCPYCDYKSVLSTNLKRHLLSHLTADKPFQCSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -