Hhal002488.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:49357-63215[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00012 0.0047 16.8 1.9 2 23 202 223 201 223 0.97 2 10 0.0001 0.0042 17.0 7.9 3 23 231 252 229 252 0.95 3 10 0.12 4.7 7.4 0.2 2 23 271 292 270 292 0.96 4 10 4.2e-05 0.0017 18.2 0.9 2 23 297 319 296 319 0.93 5 10 0.025 0.98 9.5 2.8 2 23 325 346 324 346 0.96 6 10 1.3e-08 5.3e-07 29.2 0.2 1 23 350 372 350 372 0.97 7 10 7.4e-05 0.0029 17.4 1.9 1 23 378 400 378 400 0.98 8 10 0.0012 0.048 13.6 1.0 1 23 406 429 406 429 0.96 9 10 0.017 0.68 10.0 3.2 1 23 435 457 435 457 0.98 10 10 9.7e-07 3.9e-05 23.4 0.2 1 23 463 485 463 485 0.99
Sequence Information
- Coding Sequence
- ATGCAAGATATAGAACGACCTGTCCCGCAAAGTACTTGGCATTACTCTTCAATTCATATGTTTTGCAGGGTATGTGCTAATACCAATGACTACCTTATACCAATTTTTAGAGGTGAAGGAATTGACTATCAACTTCAACTTAAAATAAGTCAGCATTTGCATGTTGAGGTTactgaaaatgatttattgcCTACTCAAGTTTGTTATCCCTGTGCATCAACATTATTggcatttcatgaaatgttggaAAATTTTGTTCAAGCTGAGAAACGTTTGAGCAGCTTTCTTTCATTAAACCGTCTAAAAAATTCAGCAAGAGATATTGAAACGGATTGTTATTTTACAGATCAATATAATGATCTTGTAGTAGACAATAGCTGTTCTACCAGCAACCTAGAAAAGGTGATGAGCTCCGATGAAGTAAATTCCTACAAATTTAAGCAACCTGTTAAAAAACGGttgttagtgGAAAGTGAGAAATTAGTGAATTTAGTACCCGAAAAAGAAGACATTGTGGAAAAtagcaattCAGCTACATCAAACACTGAAAAGAAGGATtacaaagacaaaaaaaagaaaagaaaaaaaagagaaaaactgaGTAAGTGTACAATTTGTGGAAAAGTATTTCATTATGTACAATACTTAAAATCTCATTTGTTGAGTCACTCTGATAGTAGGCCTCACCTTTGCCACATATGTGGGGCTTCATTCAAGAGAAAAGATCATGTTAACCATCATAGAAGGACAGTTCATGTAAACCATcctgaaataattaaagaacttGAAGAAAAAGGTGAAGAGCCACTGGAATGTGATGattgtggtgaaataaaacctacaaaatatgcaatgtttgttcataaaaaaaggcATATTGTAAACTGTGTTTGTGATGTTTGTCAGAAATCATTTTCTTTACCTTCTCTCCTTAAAACTCACCTGGTTAAAGCTCACACTGATGATATATGTACTTGTGATGTTTGTGGTGAAGTGTTGAAATCTGGACattctttatatattcataaaaaaaaacatctcacTAGTTATATTTGCGATGTTTGTGGAAAGAGTTTCACTCGGCCTTCTTCACTTAAAACTCATATGGTTATTCACTCTGATGACAAACCATACTCATGTGATGAATGTGGAaagtcttttaaattgaaacttcGTTTGCAGCAACATAAACAGTCTCATGGAAACTTTAGACCATATGCTTGCAATATTTGTGAGAATAAGTGCTTCAAGACAAAGGGTGCACTCATCGTTCATAATAATATGCATAATGATACGAGGCCATACCCTTGTCCTCATTGTAGTTTTAGGGCTCGTAAAAATTCTGATTTAGTTTGCCATATTAGGACTCATACTGGAGAAAAGCCTTATAAATGTGATGTTTGTGGAAGAGGATTTGCTCAAGCTGGTGATATGAGAAAACACCGTAACACTCATGACAGACAAAAGTTAGAACCATTATAG
- Protein Sequence
- MQDIERPVPQSTWHYSSIHMFCRVCANTNDYLIPIFRGEGIDYQLQLKISQHLHVEVTENDLLPTQVCYPCASTLLAFHEMLENFVQAEKRLSSFLSLNRLKNSARDIETDCYFTDQYNDLVVDNSCSTSNLEKVMSSDEVNSYKFKQPVKKRLLVESEKLVNLVPEKEDIVENSNSATSNTEKKDYKDKKKKRKKREKLSKCTICGKVFHYVQYLKSHLLSHSDSRPHLCHICGASFKRKDHVNHHRRTVHVNHPEIIKELEEKGEEPLECDDCGEIKPTKYAMFVHKKRHIVNCVCDVCQKSFSLPSLLKTHLVKAHTDDICTCDVCGEVLKSGHSLYIHKKKHLTSYICDVCGKSFTRPSSLKTHMVIHSDDKPYSCDECGKSFKLKLRLQQHKQSHGNFRPYACNICENKCFKTKGALIVHNNMHNDTRPYPCPHCSFRARKNSDLVCHIRTHTGEKPYKCDVCGRGFAQAGDMRKHRNTHDRQKLEPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -