Hhal001017.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:31674-41652[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0041 0.16 12.0 5.4 1 23 86 109 86 109 0.95 2 15 0.0003 0.012 15.5 2.7 1 23 115 138 115 138 0.95 3 15 0.00011 0.0043 16.9 1.5 1 23 144 167 144 167 0.96 4 15 0.00063 0.025 14.5 6.2 1 23 173 195 173 196 0.95 5 15 1.3e-05 0.00051 19.8 0.9 1 23 202 224 202 225 0.95 6 15 0.0023 0.092 12.7 3.6 1 23 231 254 231 254 0.97 7 15 0.0001 0.0041 17.0 4.8 1 23 260 283 260 283 0.95 8 15 0.00095 0.038 14.0 3.0 1 23 289 312 289 312 0.96 9 15 0.00021 0.0084 16.0 3.2 1 23 318 340 318 341 0.95 10 15 0.017 0.68 10.0 4.3 1 23 347 370 347 370 0.96 11 15 0.0017 0.067 13.2 5.6 1 23 376 398 376 399 0.95 12 15 0.00066 0.026 14.5 4.4 1 23 405 428 405 428 0.94 13 15 5.9e-06 0.00024 20.9 1.0 1 23 434 457 434 457 0.97 14 15 0.0099 0.4 10.8 3.6 1 23 463 485 463 486 0.95 15 15 0.59 24 5.2 5.2 1 23 492 515 492 515 0.91
Sequence Information
- Coding Sequence
- ATGTACGAAGCTGtttcAGCTATTGATATCAAACAAGAGGAAGGATCACAGATTTTGTATGGTGACCTTGTTCATGTGAAGCAAGAAAAAGAGGAAATCCTTTCCCCAGATGATGATGGCCTTATGCATGtggataaaaaagaagaaatgctTATCTCAAATTATGgtACTAAGGATTCTGTTGATGAGAAAGAAGAAATCAATCAGTATGGTTTGAaagctaaaaagaaaaataatttgaaaaagcaCAAATcacatcaatgtcctcattgtcactataaagcaaattatttttcttctttaaaacgTCATATAATGGCTCTACACACAGGTGAAAAGCcgcatcaatgtcctcattgtgaccATAAAACTGTTACAAGTGGTGCtttaaaatcacatataatGGCCCAACATAAAAGCGAGAAGCCTTACAAGTGCCCTAAATGTGACTATAAAGCCACACATGGTAGTAACCTAAAAACACATATAATGGCTCGTCATACAAGTGAGaaacctcatcaatgtcctcattgtgaccATAAAACTGTGACTAGAGCCGCtttaaaatcacatataatGTCCCATCATACTGGGGAGAAGCCTTACATATGCCCTTATTGTGACTATAAAAGTGTTAGAAGTGATCAATTAAAGTCACATATAATGGCTCATCATACagatgagaagcctcatcaatgtcctcattgtgactaTAAAACTGTAACTGGTGgtgatttaaaattacatataatgtcCTGCCATAaaggtgagaagcctcatcaatgccCTCATTGTGACTATAAATGTGTCAGAAGTGCCCAATTAAAAACTCATATAATGGCTCGTCATACAGATGAGAAGCCTCAtaagtgtcctcattgtgattataaagtCGTAAGAGGTGACTtattaaaatcacatataaGGTTTCGTCATAAAGgagagaagcctcatcaatgtcctcattgtgactaTAAAAGTGTTAGAGGTTCCCAATTAAAAGCTCACATAATGGCTCATCATACagatgagaagcctcatcaatgtcctcattgtgaccATAAAACTGTGACAGCTTACGatttgaaatttcatataatgTCCCTTCATACAAAGGAAAAGCCTCATCAATGCCCTCATTGTGACTATAAAAGTGTAAAAaggaatcaattaaaaacacatataatGGCCCATCACGAAGGTGAGAAGCCctatcaatgtcctcattgtgactaTAAATGTGTAAGAGGTAGCCAATTGAAATCACATGTAATGTTCCGTCATACGGGTGAGAAGCCTTTtcagtgtcctcattgtgactaTAAAGGTGTAAGAAGTGATAACTTAAAAGTACATATTATGTCCcgtcatacaggtgagaagCATCATGAGTGCCCTCATTGTTACTATAAAGCCACAGAAAGTGATAGCTTAAAATCACATATTATGGCTCATCATATAGATGAGAAGCCTTATCAATGTGCTCATTGCGACTATAAAACAGCTAAGAAAAAGTCTTTAAAGTTTCATATAGGGTCTTGTCATATTGGTGAAaaaccatattaa
- Protein Sequence
- MYEAVSAIDIKQEEGSQILYGDLVHVKQEKEEILSPDDDGLMHVDKKEEMLISNYGTKDSVDEKEEINQYGLKAKKKNNLKKHKSHQCPHCHYKANYFSSLKRHIMALHTGEKPHQCPHCDHKTVTSGALKSHIMAQHKSEKPYKCPKCDYKATHGSNLKTHIMARHTSEKPHQCPHCDHKTVTRAALKSHIMSHHTGEKPYICPYCDYKSVRSDQLKSHIMAHHTDEKPHQCPHCDYKTVTGGDLKLHIMSCHKGEKPHQCPHCDYKCVRSAQLKTHIMARHTDEKPHKCPHCDYKVVRGDLLKSHIRFRHKGEKPHQCPHCDYKSVRGSQLKAHIMAHHTDEKPHQCPHCDHKTVTAYDLKFHIMSLHTKEKPHQCPHCDYKSVKRNQLKTHIMAHHEGEKPYQCPHCDYKCVRGSQLKSHVMFRHTGEKPFQCPHCDYKGVRSDNLKVHIMSRHTGEKHHECPHCYYKATESDSLKSHIMAHHIDEKPYQCAHCDYKTAKKKSLKFHIGSCHIGEKPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -