Hhal007242.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Halyomorpha halys
Gene Symbol
-
Assembly
GCA_000696795.2
Location
NW:7046-12615[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0011 0.043 13.8 5.4 1 23 87 109 87 109 0.98
2 15 0.023 0.91 9.6 1.1 8 23 162 177 161 177 0.95
3 15 0.58 23 5.2 1.0 9 23 231 245 229 245 0.87
4 15 0.58 23 5.2 1.0 9 23 299 313 297 313 0.87
5 15 0.58 23 5.2 1.0 9 23 367 381 365 381 0.87
6 15 0.39 15 5.7 0.8 9 23 435 449 433 449 0.88
7 15 0.00011 0.0046 16.9 9.8 1 23 496 518 496 518 0.98
8 15 8.6e-05 0.0034 17.2 0.3 1 23 524 546 524 546 0.99
9 15 3.2e-06 0.00013 21.8 4.1 1 23 552 574 552 574 0.98
10 15 2.5e-05 0.00098 18.9 1.7 1 23 580 602 580 602 0.99
11 15 0.00024 0.0097 15.8 4.6 1 23 608 630 608 630 0.99
12 15 1.1e-05 0.00043 20.1 1.5 2 23 655 676 654 676 0.97
13 15 3.2e-05 0.0013 18.6 3.3 1 23 682 704 682 704 0.99
14 15 0.00015 0.006 16.5 1.2 1 23 710 732 710 732 0.99
15 15 6.3e-06 0.00025 20.8 3.3 1 23 738 760 738 760 0.98

Sequence Information

Coding Sequence
atggaagaaaaaagaattataaGAAAGGCTGCTTCTACCAGATATAATATCTACACTAAAGAAGCTGAATGTCACTTAAATCGTTATGGAAGTGCATCTACATCTGctgtaactttaaaaaataaggatttagaGTATAAATATAACCTAAGGAGTAGTTCAGTAGATGACAGTTTCGAAAAGGCAGGTATTTATAATGAGTCAgatactgaaacaaaaaaagaggAAGGCTTAGCTGAAGGGTTTATTAAGAAACCATTTCAGTGTAAATTTTGTATTAGGACTTTCAAAAGgcaaaaatatttgtcaagtCACATGAGGTTTCACACAATTAAAAATGAGGTAACTAAAATTGGCGCCCAAAAAAGTCTTTCAGCAGTTACTAATGCTGGTGAACTAGATTCTGATAGTGAAATAGAAATGGAAACAAATAGCAATGTAGATttggatttaaataaatctgaaaataaacaaaacaagtcTCAGACTTTCAAAAGgcaaaaatatttgtcaagtCACATGAGGATtcacacaattaaaaataaggtaactaaAATTGGCGCCCAAACAAGTCTTTCAGCAGTTACCAATGCTGGTGAACTAGATTCTGATAGTGAAATAGAAACGGAAACAAATAGCAATGTAGATttggatttaaataaatctgaaaataaacaaaacaagtcTCAGACTTCCACAAAGCAAAACTATTTATCGAGACACATGAGGTCTcacatgattaaaaataaagtaactgaAATTGGCGACCAAACATACGATTCAGCAGCTACTAATGTTGATGTACTAGATTCTGATAGTAAAATGGAAACGGAAACAAACAGTAAtgaaaatttggatttaattgaatacgaaaataaaaaacataagtcTCAGACTTCCACAAAGCAAAACTATTTGTCGAGACACATGAGGTCTcacatgattaaaaataaagtaactgaAATTGGCGACCAAACATACGATTCAGCAGCTACTAATGTTGATGTACTAGATTCTGATAGTAAAATGGAAACGGAAACAAACAGTAAtgaaaatttggatttaattgaatacgaaaataaaaaacataagtcTCAGACTTCCACAAAGCAAAACTATTTGTCGAGACACATGAGGTCTcacatgattaaaaataaggtaaccgAAATTGGTGACCAAGCATGTGGTTCTGCAGCTACTAATGTTGATGTACAAGATTCTGATAGTGAAATAGAAACTGAAACAAACAGTGATGAAGATTTGGatttaattgaatacaaaaataaaaaacataagtcTCAGACTTCCACAAGGCTAAACGATTTGTCGAGACACATGAGGTCTcacatgattaaaaataagataactgaAATTGGCGACCAAACATGCGATACTAATGTTGATGTACAAGATTCTGATAGTgaaattgaaatggaaaaaaaaagtaataaagatcTGAACTTAAATGAGTCTAGAAATAAACCACATAAGTGTCAGTATTGTACTAAGACTTTTACCAGACGAAACTGTTTACTAAGGCATACTAGGACCCATACAGGAGATCGACCTTATGAGTGTCCTGTCTGTGAGAAGAGATTTGTAGAGCACGGTGCAATGAGAGTACACTATAGAATCCACACTGGAGAACGACCATTCATATGTAACCTCTGCAGTAGATCTTTCCGTCACAAAAGTAATTTGACGTTACATGTAAGACGGCATTTTAATGACAAACGTTACAAATGTCCTCTGTGTCCTAAAACATTTATCAGCCCtggaaattgtaaaaaacacGAAAGGAGTCAttcaagtgaaaaaatatttaagtgcgAAGAGTGCTTTCAAAGTTTCAAAACACATAAGGGATTGTCAAAGCATGCGAAAACCCATGAAGATAGTATCCATAAGTGTAAAGTGTGCCTAAAGGATTCTGGTAGTTCCAATGCAAAAGAACAATTGTTAAAATGCGAATTATGTGAAAAAAGTTTTGCCAAAACTAGTTCATTGAAATTACACTATAGAACTCATACAGGCGAGAAGCCTTACAAATGCAGAACTTGCCACAAAAGTTATGCCAGGCTTGGAACTTTGATGaaacatcaaaatatccacacgggagaaaaattatacaaatgtaGTGAGTGTAATAAAGCTTTCACTTGGCAATTCAGTTTGTCGGTACATAAAAGGGTACATACAGGAAAGAAACCATACCATTGCCAAATATGTAACAAGTATTTTAcacaaatatctaatttaaacaGACACTTATTAAGCCATAAACAGCAAACTTCTAAAGATGATTAA
Protein Sequence
MEEKRIIRKAASTRYNIYTKEAECHLNRYGSASTSAVTLKNKDLEYKYNLRSSSVDDSFEKAGIYNESDTETKKEEGLAEGFIKKPFQCKFCIRTFKRQKYLSSHMRFHTIKNEVTKIGAQKSLSAVTNAGELDSDSEIEMETNSNVDLDLNKSENKQNKSQTFKRQKYLSSHMRIHTIKNKVTKIGAQTSLSAVTNAGELDSDSEIETETNSNVDLDLNKSENKQNKSQTSTKQNYLSRHMRSHMIKNKVTEIGDQTYDSAATNVDVLDSDSKMETETNSNENLDLIEYENKKHKSQTSTKQNYLSRHMRSHMIKNKVTEIGDQTYDSAATNVDVLDSDSKMETETNSNENLDLIEYENKKHKSQTSTKQNYLSRHMRSHMIKNKVTEIGDQACGSAATNVDVQDSDSEIETETNSDEDLDLIEYKNKKHKSQTSTRLNDLSRHMRSHMIKNKITEIGDQTCDTNVDVQDSDSEIEMEKKSNKDLNLNESRNKPHKCQYCTKTFTRRNCLLRHTRTHTGDRPYECPVCEKRFVEHGAMRVHYRIHTGERPFICNLCSRSFRHKSNLTLHVRRHFNDKRYKCPLCPKTFISPGNCKKHERSHSSEKIFKCEECFQSFKTHKGLSKHAKTHEDSIHKCKVCLKDSGSSNAKEQLLKCELCEKSFAKTSSLKLHYRTHTGEKPYKCRTCHKSYARLGTLMKHQNIHTGEKLYKCSECNKAFTWQFSLSVHKRVHTGKKPYHCQICNKYFTQISNLNRHLLSHKQQTSKDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-