Hhal010748.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Halyomorpha halys
Gene Symbol
-
Assembly
GCA_000696795.2
Location
NW:468955-482076[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0057 0.23 11.5 3.7 1 23 114 136 114 137 0.95
2 16 0.0011 0.043 13.8 1.7 1 23 143 166 143 166 0.94
3 16 0.081 3.2 7.9 1.3 1 23 172 195 172 195 0.92
4 16 0.031 1.3 9.2 8.6 1 23 201 223 201 224 0.94
5 16 0.00045 0.018 15.0 4.4 1 23 230 252 230 252 0.98
6 16 0.00025 0.01 15.8 2.3 1 23 258 280 258 280 0.98
7 16 0.00075 0.03 14.3 2.5 2 23 287 308 286 309 0.95
8 16 5.1e-06 0.0002 21.1 3.5 1 23 315 337 315 338 0.96
9 16 2.8e-05 0.0011 18.8 1.1 1 23 344 366 344 367 0.96
10 16 0.12 4.7 7.4 7.1 1 23 373 396 373 396 0.94
11 16 0.0098 0.39 10.8 6.9 1 23 402 424 402 425 0.96
12 16 0.27 11 6.2 4.5 1 23 431 454 431 454 0.97
13 16 0.0053 0.21 11.6 3.9 1 23 460 482 460 482 0.99
14 16 1.3e-05 0.00051 19.9 1.3 1 23 488 510 488 511 0.95
15 16 9.3e-07 3.7e-05 23.4 2.2 1 23 517 539 517 539 0.98
16 16 0.00071 0.028 14.4 5.4 1 23 545 567 545 568 0.95

Sequence Information

Coding Sequence
ATGGAAGAATGTGGTACAGTTAACCGAGATGTTAacataaaagaagaaatgaccGATGAAACTGAGTCTAATTGTATAAGTAATGGTGATGTtactataaaagaagaaatgactGATGAAACGGAGTTAGATTATGGCCCAAATTATGTGAAACAAGAAGATGTAATTCTTCTTGATGAAGTTCCCACCATCGATATCAAAGAAGAGGAAGGAGTGCAGATTTATTTTGGTTCCAACGATCCTGTCGAGAATAAAGAAAAGATCGATCAGTATATCAAACCTAAAAGGAGCATTGATTTGAAAAACGATTTTGAGTCTTGtcgtaaaattaaaaagcatcATCAAtgccctcattgtgaatatGAAACATCAAGAATTACCTATTTAAAAGATCACATATTGGCCCACCATACTGGTGTTAAGCCTCATAAATGTCTCCATTGCGATTACAGTGCAGTTCGCAAGAGTGCTTTAAAAATTCATGTAATGGCACGCCATACAGCTGATAAGCCTTATAAATGTCGCTATTGCGACTATTGTGCAgttgaaatgtattatttaaaaattcatgtaaTTGCCCGCCATTCTGTTGAAAAGCCTCATAACTGTCCCCATTGCCACTATGGTACAGTTCATAAGAGCACTTTAAGAATTCATGTTAAGGCACACCATACAGGTGATAAGCCTCATAAATGTTCCTATTGTGACTACAGTGCAGTTCATATGAGTACTTTAACAAAACATCTAATGACCCATACTGGCGAGAAACCTCATAAATGTCTCTATTGTGACTACAGTGCTGTTTTAAAgagtactttaaaaaaacatataatgaccCATACTGGGGATAAGCCTAATAAATGTCCCCATTGTGTCTACAGTACAGttcaaaagattaatttaaaaacacatataatGGCCCACCATACAGGTGATAAACCTCATAAATGTCCCAATTGTGACTACAGTACAGTTCAaaagagtaatttaaaaattcatgtaaTGACCCACCATACAGGTGATAAGCCTTATAAATGTCCCAATTGTGAATTCAGTGCAGTTCAaaagagtaatttaaaaacacacatAATGGCACACCATACAGGCGATAAGCCTCATAAATGTCACCATTGTGATTACAGAACAGTGCttaagaatgatttaaaaattcatgtaaTGGCTTGCCATACTAGTAATAGGCCCTATAAATGCTTTCATTGTGACTATAAAGCTGTTACTAATACCAAGTTAAAACATCATATATTGGTCCACCATGTAGGTGATAAGCCTTTTAAATGTCATTATTGTAATTATGGAGCATTTGAAATGcgtactttaaaaaatcatataatggtATGTCACACTGGTGAAAAGCCTTATCAATGTTTTCATTGCGACTATAAAGGAACaacaattactaaattaaaataccatATAATGACCCATATAGGTGATAAGCCTCATAAATGTCCCAATTGTGATTACAGTACAGTTGTAAGTAGTAATTTAAAAGCACATATAATGGCCCACCATACATGTGATAAGCCTCATAAATGTCCCTATTGTGACTACAGTACAGTTCAGAAGAGTAATTTGAAAACACATTTAATGATCCATACAGGCGATAAGCCCCATAAATGTCCCCATTGTGACTACAGTAcagttctaaaatttaatttaaaaacacatataatGGCCCACCATACAAGTGGTAAGCTTCATAAATATCCTGATTGA
Protein Sequence
MEECGTVNRDVNIKEEMTDETESNCISNGDVTIKEEMTDETELDYGPNYVKQEDVILLDEVPTIDIKEEEGVQIYFGSNDPVENKEKIDQYIKPKRSIDLKNDFESCRKIKKHHQCPHCEYETSRITYLKDHILAHHTGVKPHKCLHCDYSAVRKSALKIHVMARHTADKPYKCRYCDYCAVEMYYLKIHVIARHSVEKPHNCPHCHYGTVHKSTLRIHVKAHHTGDKPHKCSYCDYSAVHMSTLTKHLMTHTGEKPHKCLYCDYSAVLKSTLKKHIMTHTGDKPNKCPHCVYSTVQKINLKTHIMAHHTGDKPHKCPNCDYSTVQKSNLKIHVMTHHTGDKPYKCPNCEFSAVQKSNLKTHIMAHHTGDKPHKCHHCDYRTVLKNDLKIHVMACHTSNRPYKCFHCDYKAVTNTKLKHHILVHHVGDKPFKCHYCNYGAFEMRTLKNHIMVCHTGEKPYQCFHCDYKGTTITKLKYHIMTHIGDKPHKCPNCDYSTVVSSNLKAHIMAHHTCDKPHKCPYCDYSTVQKSNLKTHLMIHTGDKPHKCPHCDYSTVLKFNLKTHIMAHHTSGKLHKYPD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-