Hhal002788.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:35381-49620[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 7.3 2.9e+02 1.7 6.9 1 21 127 147 127 150 0.94 2 22 0.0034 0.13 12.2 4.9 1 23 156 178 156 178 0.97 3 22 0.00049 0.019 14.9 2.4 1 23 184 207 184 207 0.96 4 22 0.001 0.041 13.9 7.4 1 23 213 235 213 236 0.95 5 22 0.0052 0.21 11.6 6.3 1 23 242 264 242 265 0.95 6 22 0.0025 0.1 12.6 0.3 1 23 271 294 271 294 0.97 7 22 0.00011 0.0045 16.9 4.3 1 23 300 322 300 322 0.98 8 22 0.00035 0.014 15.3 5.1 1 23 328 350 328 351 0.95 9 22 0.0085 0.34 11.0 6.0 1 23 357 379 357 380 0.96 10 22 0.07 2.8 8.1 7.9 1 23 386 408 386 409 0.95 11 22 0.00058 0.023 14.6 1.3 1 23 415 438 415 438 0.96 12 22 0.00088 0.035 14.1 6.5 1 23 444 466 444 467 0.94 13 22 0.00065 0.026 14.5 8.7 1 23 476 498 476 499 0.95 14 22 0.006 0.24 11.4 2.8 1 23 505 527 505 528 0.95 15 22 0.013 0.5 10.4 3.8 1 23 534 557 534 557 0.94 16 22 0.78 31 4.8 3.8 1 23 563 586 563 586 0.91 17 22 0.15 5.9 7.1 4.5 1 23 592 614 592 615 0.94 18 22 0.0006 0.024 14.6 3.9 1 23 621 643 621 644 0.95 19 22 0.0011 0.044 13.8 1.7 2 23 651 672 650 673 0.95 20 22 0.00033 0.013 15.4 5.4 1 23 679 701 679 702 0.95 21 22 0.07 2.8 8.1 7.7 1 23 708 730 708 731 0.95 22 22 0.0011 0.044 13.8 1.9 2 23 738 760 737 760 0.93
Sequence Information
- Coding Sequence
- ATGGCAGAAGCTGtTGCAGGTCATAGTGCTGGTTTCAAACACGAAGAAGGATCACAGATTTATTATGatGGGCTCGTCCATGTGAAAGAAGATGAGGAAGTGCTGATCCCAGATGAtgATCATATGCTTGGTATCAAACAAGAGGAAGGACCACAGATTTACTCAGatGGGCTTGTGTGTGTGAAAGAAGAAAGAGATCCCCTCGTCCCAGATGATGaTGGGCTGGCCCATGTGAAAGAAGAAAGAGATCCGCTCGCCCCAGATGATGcTGCAGAGGATTCATTTGATATGATAGAAAAAAGGAATCAGTGTGCCTTAAAAGCTAAGATgcaaatggattttaaaaaatgtatttctcagCATACTGGTCAAAACATCTTTCAATGTTTTCACTGTGCCTATAATACTGgccaattatttcaattaagaaaacatataatGTGCCATCATACTGGTGAGaaacctcatcaatgtcctcattgtgattataaagctGTAAGAAGAGATAAATTAAGGTTACACATAATGCATCATACTGGTAGGaaacctcatcaatgtcctcactgtgattacAAAACTGTTACAAATCctgaactaaaattacatataatgtaCCGTCATAGTGGTGAGaaacctcatcaatgtcctcattgtgattataaatctgtAACAAGGGgtaatttaaaatcacatataatGCATCATCACACTGGTGAGaaacctcatcaatgtcctcactgtgattataaagcTGTGAAAAAGGGTCAATTAAAGGTACATATAATGCATCAtcatactggtgagaagccttatcaatgtcctcactgtgataTTAAAGATGTTAGAAGAGGTAGTTTAGAAATACATATTATGAGGCTTCATACTGATGAGaggcctcatcaatgtcctcactgtgaatataaaactgttacaaagtctgaattaaaaatacatatgtacCGTCATAGTGGTGAGAAACCTCATCAGTGTccttattgtgattataaatctgCAACAAGGGGTCAATTAAACTTACATATAAGGCATCATCACACTGGTGAGAAACCTTATCAATGTCCCCACTGTGATTATAAAGCTGTGAGAAGATATCGATTAAAGTTACATATAATGCATCATCACACTGGTGAGAAACCTCATCAATGTCCCCACTGTGATTATAAAGCTGTGAGAAGATATCGATTAAAGTTACATATAATGCATCAtcatactggtgagaagcctcatcaatgtcctcactgtgattataaagcTGTAAGAATTCAGAATTTAAAAGCACATATTATGCAACTTCATACTGAAGAGAAACCACATCagtgtcctcactgtgattataaaacCGCAAGAAAGGgtaatttaaaatcacatttaacGTTCCATCACAATAATCTATCAGACAATAAGCCTCATaaatgtcctcactgtgattataaatctgTAACAAGGAgtaatttaaaatcacatataatGCATCATCACACTGATGAGaaacctcatcaatgtcctcactgtgattataaagcTATAGGAAGCGATGATTTAAAATCACATGTAATGCAACATCATACAGGTGAGaaacctcatcaatgtcctcactgtgattataaaacTGTAAGAAGGAGcattttaaaatcacatataatGTTTCAACATGGAGACCATAAGCCTCAccaatgtcctcactgtgattataaaactttaaaaagggGTTTTTTAGAATCACATATAATGTTTCGTCATACAGACTataagcctcatcaatgtcctcactgtgattataaaactgaaagaagtgttattttaaaatcacatataatCTTTCATCATACAGTTCataagcctcatcaatgtcctcactgtgattataaagctgtaaaaagtgataatttaaaattacatataatgctTCATCATACTGGCGAGATACCTaatcaatgtcctcactgtgattataaagcTATTGgaagtgataatttaaaatcacatataatGCAACATCATACTGAGGAGAGACCACATCAGTGTCCTCAATGTGATTATAAAACTGCAAGAAGGGgtaatttaaaatcacatataatGCATCATCATATTGGCGAGAAACCTCATCAATGTCCCCACTGTGATTATAAGGCTCAAAGAATCTgtaatttaaaatcacatataatGTCCCATCATACTGACCATAACCCTCttcaatgtcctcactgtgatcATAAAGCTGTAAgaagtgataatttaaaattacatatattgttCTATCACACAGACAAGAAGTCCCCACTGTGa
- Protein Sequence
- MAEAVAGHSAGFKHEEGSQIYYDGLVHVKEDEEVLIPDDDHMLGIKQEEGPQIYSDGLVCVKEERDPLVPDDDGLAHVKEERDPLAPDDAAEDSFDMIEKRNQCALKAKMQMDFKKCISQHTGQNIFQCFHCAYNTGQLFQLRKHIMCHHTGEKPHQCPHCDYKAVRRDKLRLHIMHHTGRKPHQCPHCDYKTVTNPELKLHIMYRHSGEKPHQCPHCDYKSVTRGNLKSHIMHHHTGEKPHQCPHCDYKAVKKGQLKVHIMHHHTGEKPYQCPHCDIKDVRRGSLEIHIMRLHTDERPHQCPHCEYKTVTKSELKIHMYRHSGEKPHQCPYCDYKSATRGQLNLHIRHHHTGEKPYQCPHCDYKAVRRYRLKLHIMHHHTGEKPHQCPHCDYKAVRRYRLKLHIMHHHTGEKPHQCPHCDYKAVRIQNLKAHIMQLHTEEKPHQCPHCDYKTARKGNLKSHLTFHHNNLSDNKPHKCPHCDYKSVTRSNLKSHIMHHHTDEKPHQCPHCDYKAIGSDDLKSHVMQHHTGEKPHQCPHCDYKTVRRSILKSHIMFQHGDHKPHQCPHCDYKTLKRGFLESHIMFRHTDYKPHQCPHCDYKTERSVILKSHIIFHHTVHKPHQCPHCDYKAVKSDNLKLHIMLHHTGEIPNQCPHCDYKAIGSDNLKSHIMQHHTEERPHQCPQCDYKTARRGNLKSHIMHHHIGEKPHQCPHCDYKAQRICNLKSHIMSHHTDHNPLQCPHCDHKAVRSDNLKLHILFYHTDKKSPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -