Hhal005169.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:94187-112775[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0012 0.048 13.6 0.6 2 23 114 136 113 136 0.97 2 16 0.00048 0.019 14.9 1.1 1 23 142 165 142 165 0.97 3 16 0.0017 0.067 13.2 1.1 2 23 172 194 171 194 0.93 4 16 0.19 7.4 6.7 8.7 1 21 200 220 200 223 0.94 5 16 0.0002 0.0078 16.1 2.0 1 23 229 252 229 252 0.95 6 16 0.00039 0.016 15.2 0.2 2 23 259 281 258 281 0.94 7 16 0.00071 0.028 14.4 0.9 1 23 287 310 287 310 0.96 8 16 6e-05 0.0024 17.7 2.0 1 23 316 339 316 339 0.96 9 16 0.00019 0.0076 16.2 0.1 1 23 345 368 345 368 0.95 10 16 0.00034 0.013 15.4 3.6 2 23 376 397 376 397 0.97 11 16 0.013 0.51 10.4 2.2 1 23 403 426 403 426 0.97 12 16 0.0004 0.016 15.2 5.0 2 23 433 454 433 454 0.97 13 16 0.011 0.43 10.7 3.1 1 23 460 483 460 483 0.97 14 16 0.002 0.08 12.9 6.9 2 23 490 511 490 512 0.95 15 16 0.0038 0.15 12.1 7.0 1 23 518 540 518 541 0.95 16 16 0.0018 0.07 13.1 2.9 1 23 547 569 547 570 0.96
Sequence Information
- Coding Sequence
- ATGGAACAGCCTGcTATGAATGACTCAAAGGTTACTATTAAAGaagaattggaagaagatactGACTTTCCCACGATTCATATTAAAGAAGAGGAAAATCCACAGATTTATTTTGGCGGGCTCATTCATGTTAAGTTAGAAGAAGAGCTGCTTATCCCAGATGAAGgAGCCGAGATTTCCTTTGACCAAAAGGGAGAGATCAGTTGGTTCAAACCTGAGACTAAAATACATTCAAAGAACCTTGAGATGTCTCAGACCGATGAGAACCCTTATGAAGCAGCTAGAGAAAGTACACTAAAAATTCATCAAATCCCCCATCATGCAAGCAAGAAGTCAAaacaatgtcctcattgtgattttaaaacagcaattgcaactaatttaaaaaatcatattgcgACCATTCATACAGGTGAAAAGTTTCATCAATGTCCTTACTgtgaatataaaactataagaaGAGGCAATATAAAAAGACATGTTGCAACTCTCCATATTGGTGATAAATCTTTGCAATGCCCTCATTGTGACTataaaacagtaagaacagatgttttaaaaaagcaCATAGATAATTCTCATATAAGTGAGAAGTCATTTGAATGTcatcattgtgaatataaaacagtaaaaattagttcattaaaaaGACATATTAAGTGTCACcatacaggtgagaagcctcatcaatgttcTCACTGCgattataaaactgtttatcCAAGTGaattgaaaatacatattatggCTCGTCATAATGGCGAGAAGCCTCTTCAATGTCCTGATTGTAATCATAAAGCAGTGTATCCTGGGGAATTGAAAAAACATATGATGGCCAACCATACAGGTGAAAAACCTTATCAATGTCGTAATTGTAGCTATAAAACAGTATATGCATATGATTTAAAAAGACATATAAATGCACTTCATATAGGTGTTAAATCTTTCCAGTGCcattattgtgattataaaacTGCAAGAggtagtgatttaaaaaaacatattatggctcgtcatacaggtgagaagCTTCATCAATGCCCTTATTGTGACTACAAAGTAGTAGAAgcaggtaatttaaaaatacatattatggcTCAACATACAAGCGAGGAGAAGCCTCGTCAATGTCCTCATTGCGACTATAAAACAGTATATgcacaacatttaaaaaaacatatggtCCGTCATACAGGCGAGAAGCTGCATAAGTGTCGTTATTGTGTCTTTAAAACAGCTGAAgcaagtaatttaaaaacacatgttATGACTCAACATACAAGTGAGAAGCTTcgtcaatgtcctcattgtgactataaaacagtatataaacaacatttaaaaaaacatatggtCCGTCATACAGGCAAGAAGCTGCATCAGTGTCGTTATTGTGTCTTTAAAACAgctgaaaaaagtaatttaaaaacacatgttATGACTCAACATACAAGTGAGAAACTTcgtcaatgtcctcattgtgactataaaacagtatataaacaacatttaaaaaaacatactatGATTCACCATGCAGGTGAGAAACCTCatcagtgtcctcattgtgactGTAAAACAGCATATCTAAATGagttgaaaaaacatataatggtCCACCATACCGGTGAGAAGCcttatcaatgtcctcattgtgactaCAAAACAGCAAATGTAAGTAATTCAAAAAGACATATGGTGATCCACCATTCAAATGAAAAAGctaaattaatatcaacattgTGA
- Protein Sequence
- MEQPAMNDSKVTIKEELEEDTDFPTIHIKEEENPQIYFGGLIHVKLEEELLIPDEGAEISFDQKGEISWFKPETKIHSKNLEMSQTDENPYEAARESTLKIHQIPHHASKKSKQCPHCDFKTAIATNLKNHIATIHTGEKFHQCPYCEYKTIRRGNIKRHVATLHIGDKSLQCPHCDYKTVRTDVLKKHIDNSHISEKSFECHHCEYKTVKISSLKRHIKCHHTGEKPHQCSHCDYKTVYPSELKIHIMARHNGEKPLQCPDCNHKAVYPGELKKHMMANHTGEKPYQCRNCSYKTVYAYDLKRHINALHIGVKSFQCHYCDYKTARGSDLKKHIMARHTGEKLHQCPYCDYKVVEAGNLKIHIMAQHTSEEKPRQCPHCDYKTVYAQHLKKHMVRHTGEKLHKCRYCVFKTAEASNLKTHVMTQHTSEKLRQCPHCDYKTVYKQHLKKHMVRHTGKKLHQCRYCVFKTAEKSNLKTHVMTQHTSEKLRQCPHCDYKTVYKQHLKKHTMIHHAGEKPHQCPHCDCKTAYLNELKKHIMVHHTGEKPYQCPHCDYKTANVSNSKRHMVIHHSNEKAKLISTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -