Hhal004766.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:622852-636126[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 9.3e-05 0.0037 17.1 1.1 1 23 130 153 130 153 0.95 2 19 0.00026 0.01 15.7 2.4 1 23 159 181 159 182 0.95 3 19 0.0013 0.051 13.6 6.1 1 23 188 210 188 211 0.95 4 19 0.0074 0.3 11.1 2.0 1 23 217 240 217 240 0.95 5 19 0.0033 0.13 12.3 3.7 1 23 246 268 246 269 0.95 6 19 0.0006 0.024 14.6 3.7 1 23 275 298 275 298 0.98 7 19 0.0016 0.062 13.3 1.9 1 23 304 326 304 327 0.95 8 19 0.059 2.4 8.3 1.4 2 23 334 356 333 356 0.89 9 19 0.00049 0.02 14.9 1.1 2 23 363 385 362 385 0.95 10 19 0.00028 0.011 15.6 4.6 1 23 391 414 391 414 0.97 11 19 0.0012 0.049 13.6 2.1 1 23 420 443 420 443 0.96 12 19 0.027 1.1 9.4 4.7 1 23 449 472 449 472 0.97 13 19 0.00092 0.037 14.0 7.1 1 23 478 501 478 501 0.94 14 19 0.00098 0.039 13.9 2.3 1 23 507 530 507 530 0.96 15 19 0.006 0.24 11.4 7.0 1 23 536 559 536 559 0.97 16 19 0.0012 0.048 13.6 3.3 1 23 565 588 565 588 0.94 17 19 0.0031 0.12 12.3 5.5 1 23 594 616 594 617 0.95 18 19 0.00018 0.0071 16.2 3.2 1 23 623 646 623 646 0.96 19 19 0.0044 0.18 11.9 3.5 1 23 652 674 652 675 0.95
Sequence Information
- Coding Sequence
- ATGGAAGACGttaCAGCTATTGATATCAAACAAGAGGAAGGACCAAAGATTTTTTATGGTGGCCTTGTTAATGTGAAgctagaaaaagaagaaatcctTTCCCCGGATGAAGttccaGCTACTAATATCAAACAAGAGACAGGACCACAGATTTTTTATGGTGGCCTTGTTCATGTGAAGCTAGAAAAAGAGGAAATCCTTTCCCCAGATGATGGTACTAAGGATTCTGTCAATGGGATTGAAGAAAACAGTCAGTATAGCTGGAAAgctacaatgaaaaataatttaggaaagaatAAACATCAATGTCCTTATTGTGATTATAAGGCTTTGAAGggtttatttctaaaaacacaTATAATGTCCCGTCATACAGGGGAGAAACCTCATCAATGCccttattgtgattataaaagTGTAAGAGCTACTCaattaaaatcacatataatGGCTCGCCATACAGATGAGAAGGCTCATCAATGTCCTTATTGTGACTATAAAACTGTAACAAGTGGTGTTCTAAAATCACATATAATGTCCCATCATACAGgggagaagcctcatcaatgttctcattgtgactataaaacagtcagaagtaatcaattaaaatcacatataatGGCTCATCATACAGATGAGAAGCCTCACCAATGTCCTTATTGTAACCATAAAACTGTAAAAGGTggcaatttaaaattacatataatggcTTATCATACAAgagagaagcctcatcaatgccCTCATTGTAACTATAAAAGTGTAAGAGGTGCCCaattaaaatcacatataatGGCTCATCATACAGATGAGAAGTCTCATCAATGTCCCCATTGTGGCCATAAAACTATAACAGATGATgatttgaaattacatattatgaCCTATCATACATGGGAGAAACCTCATCAATGCCCTTATTGTGACTACAAAACCATAGAaagtttgaatttgaaattacatataatggcCCATCATACTGCCGAAAAAACTCTTCAATGTTCCCACTGTGATTATAAAACTGCCGATAAAAGgtctttaaaatttcatataatagcTCAGCATACAGATGAGAAGGCTAAaaaatgtcctcattgtgactaTAAAGCAGCTTATTTAAGTTCCttaaaaagacatataatgGCTTTCCACACAGGTGAGAAggctcatcaatgtcctcattgtgaccATAAAACTGTAACAAGTGGCCaattaaaatcacatataatGTCCCAACACAGAAGCGAGAAGCCTTACCAGTGCCCTAGTTGTGACTATAAAACCAAACATGGTAGTTACCTAAAAACACATATAATGGCTCGTCATACATGTGAGAAatctcatcaatgtcctcattgtgaccACAAAACTGTAGCAAGTGGTGCTTTAAAATTGCATATAATGTCCTGTCATAAAGGTGAAAAGccccatcaatgtcctcattgtgactaTAAGTGTGTAAGAAGTACCCatttaaaatcacatataatAGCTCGTCATACAGATGAAAAACCTTTtcagtgtcctcattgtgatcataaaactgtaaaaggtagcaatttaaaattacatataatggcCTATCATACTAgagagaagcctcatcaatgccCTCATTGTAACCATAAAACTGTAACAAGAGGTGCtttaaaatcacatataatGTCCTGTCATACAGGAGAGAAGCCCCataaatgtcctcattgtgactaTAAGAGTGTAAGATATACCCaattaaaatcacatataatAGCTCGTCATACAGAAGAGAAACCTCatcagtgtcctcattgtgatcATAAAACTGTGAATGGTggcaatttaaaattacatataatgtcCCATCATACAAGGGAAAAGCCTCATCAATGCCCTCATTGTGACTATAAAAGTATAAGACCTTATCaattaaaatcacatttaataTCCCGTCATAAAGGCgaaaagcctcatcaatgtGCTCATTGTGACTATAAAAGTGTAAAAAGTGATCTTTTAAAAGTACATATTATGGCTCATCATATAGACCACCAAGTCTCACCAGTGCCCTCATTGAGACTATAA
- Protein Sequence
- MEDVTAIDIKQEEGPKIFYGGLVNVKLEKEEILSPDEVPATNIKQETGPQIFYGGLVHVKLEKEEILSPDDGTKDSVNGIEENSQYSWKATMKNNLGKNKHQCPYCDYKALKGLFLKTHIMSRHTGEKPHQCPYCDYKSVRATQLKSHIMARHTDEKAHQCPYCDYKTVTSGVLKSHIMSHHTGEKPHQCSHCDYKTVRSNQLKSHIMAHHTDEKPHQCPYCNHKTVKGGNLKLHIMAYHTREKPHQCPHCNYKSVRGAQLKSHIMAHHTDEKSHQCPHCGHKTITDDDLKLHIMTYHTWEKPHQCPYCDYKTIESLNLKLHIMAHHTAEKTLQCSHCDYKTADKRSLKFHIIAQHTDEKAKKCPHCDYKAAYLSSLKRHIMAFHTGEKAHQCPHCDHKTVTSGQLKSHIMSQHRSEKPYQCPSCDYKTKHGSYLKTHIMARHTCEKSHQCPHCDHKTVASGALKLHIMSCHKGEKPHQCPHCDYKCVRSTHLKSHIIARHTDEKPFQCPHCDHKTVKGSNLKLHIMAYHTREKPHQCPHCNHKTVTRGALKSHIMSCHTGEKPHKCPHCDYKSVRYTQLKSHIIARHTEEKPHQCPHCDHKTVNGGNLKLHIMSHHTREKPHQCPHCDYKSIRPYQLKSHLISRHKGEKPHQCAHCDYKSVKSDLLKVHIMAHHIDHQVSPVPSLRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -