Hhal005875.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- znf711
- Assembly
- GCA_000696795.2
- Location
- NW:311027-352478[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0024 0.094 12.7 0.6 1 21 24 44 24 45 0.94 2 22 0.00073 0.029 14.3 0.7 1 23 53 76 53 76 0.95 3 22 0.34 13 5.9 0.7 1 21 95 115 95 116 0.95 4 22 6.2e-06 0.00025 20.8 2.1 1 23 124 146 124 146 0.99 5 22 8.9e-05 0.0036 17.2 3.5 1 21 155 175 155 176 0.95 6 22 0.00055 0.022 14.7 4.9 1 23 184 207 184 207 0.96 7 22 0.018 0.72 9.9 2.2 1 21 211 231 211 232 0.96 8 22 0.0023 0.09 12.8 0.5 1 20 240 259 240 260 0.96 9 22 0.017 0.69 10.0 2.3 1 21 267 287 267 288 0.96 10 22 0.083 3.3 7.9 7.8 1 23 296 319 296 319 0.92 11 22 0.015 0.6 10.2 2.0 1 21 352 372 352 373 0.96 12 22 0.00035 0.014 15.3 2.1 1 23 381 404 381 404 0.93 13 22 0.017 0.69 10.0 2.4 1 21 438 458 438 459 0.95 14 22 0.00029 0.011 15.6 1.1 1 23 467 490 467 491 0.92 15 22 0.0037 0.15 12.1 1.1 1 21 581 601 581 602 0.95 16 22 0.0022 0.089 12.8 4.3 1 23 610 633 610 633 0.96 17 22 0.072 2.9 8.1 0.4 5 21 695 711 693 712 0.93 18 22 0.00038 0.015 15.2 0.2 1 20 720 739 720 741 0.95 19 22 0.11 4.5 7.4 3.6 5 21 755 771 754 772 0.93 20 22 8.1 3.2e+02 1.6 0.3 1 9 781 789 781 791 0.86 21 22 0.016 0.65 10.1 0.8 1 21 817 837 817 838 0.94 22 22 0.47 19 5.5 9.0 1 23 846 869 846 869 0.93
Sequence Information
- Coding Sequence
- ATGGTTGTTTCATTTAGTTATAAAgttaatgGTTCTGgcgagaaatataaattaaacaatactcCATTTTTTGTATGTGAAGTATGTCAAAGGAGTTATAGATCAAAAACTGGATTGTATgtccacaaaaaatattattgtggtAAAGAGGCACAATTCAAGTGCCCTTATTGTCCATACAAAGCAAAGCAGACTGTCAATTTAAAATCCCATGTAATGTTAAAACATCAAAGAggagaaaatttttatattttatggAGGGAACCTCCATTAGAGCATCAATTTCAGTGCGAAGCATGTTTGaagatatataaatcaaaagcaGGATTTTATTTACATCAAAAGTTCGATTGTGGTAAAGAACCTCAATTTCAATGTCCACAATGCCCTCACAAGTCTAAAAGGAAAGGAGATTTGAAAAGACATATGGCAactcatttttcagcaGTTATTGGCAACGGATACTGCTGTGATAAATGTGGAAAGAATTACAGTTACTCAGGAAGCCTTAAAAGGCATCAAAAATATGAGTGTGGGAAAGAGCCTCAGTTCCAGTGTCCTTATTGTTCACATAAGGCGAAACATCGTTCCAATTTAAAATCCCACATGATTTATATGCATTCATTACCATATGTTTGTACTAAATGTAACAAGGGATACAGAATCAGACAAAGCCTTTATAGCCACCAGAAACACGAATGTGGAAAGGACCCTCAATTTCACTGTCCATATTGTACTTACGGAGCAAAACAAAAAGCCAGTCTTAAGAGACATATTATTTgtgTTGCTGATTTCCCTTATGTTTGTAACAGGTGTAATAAGGCTTATAGAATCAAGAATAGCTTTTATAAACACCAAAAGTTCGATTGCGGTTTAGATCCTCAGTTCCACTGTCCACACTGTTCTTATAGAGCAAAACATAAAACCAGTCTTAAGAGACATCTTATTTTTAAGCATTTGtcaagtgtgGTGCAGATTTCCCATATGTTTGTAACAGGTGTAATAAGAGATATAGACTCAAGAATAGCCTTTACAGCCATCAAAATGTTACCTTATGTTTGTACTCAATGTAACAAAGGATACAGAATCAAGCAAAGCCTCTATAGTCACCAGAAACATGAATGTGGAATTGATCCTCAGTTTCCCTGCCCATATTGCCCTTATAAGGCTAAACAGAAGCCAAATCTTAAGAGACATATTCATTTTAAGCATTATGTGTCaagtgtgGTGCAGTGTTCCCTTATGTTTGTAACAGGTGTAATAAGGGATATAGAATCAAGAAAAGCCTTTACAGCCATCAAAACGTTACCGTTTGTTTGTACAAAATGTAACAAGGGATACAGGATCAAGCAAAGCCTCTACAGTCACCAGAAACATGAATGTGGAATTGATCCTCAGTTTCCCTGCCCATATTGCCCTTATAAGGCTAAACAGAAGCCAAATCTCAAGAAACATATAGTTTTGAAACATCATCAACCTGCTGTGCAAAGCAGTTTCCATTTGTCTGTGAAAAGTGTAATAGAGCATACAGATTTAAGGATAGCCTTTACAGTCACCAGAAATATGAATGTGGGAAGGAGCCGCAATTCTCTTGTCCTTACTtatgtttttgagaaaagtaaagtaaaaagtaCAGGTGAGGatcatcttttaatttatttatgtatattgaaTCTATTCGTTTCTAATaatgaatgtatatttttaggtCATTATTATGCCTCATTGAAGCAGAAACAATTTAAGTGTGATACATGTGAAAAGGCATACACTTACAAAGCAGGACTTTACcagcataaaaaatatgagtGTGGAAAAGAACCACAATTTCAATGCCCACATTGCCCTTACAGGTCTAAACAGAAAGCTACAATGAAAACTCATATATGTAATGTTCATCTCGGAAACTTATCTAATTCTCCATACAAagcaaatAAACTGTTCTTTGTACctcttatttacaaaaaaaaactcactatTCAGAAAGAAGTAAGTGCtgttcatttaaacaatatagcAGGAAAACTAGGACAGACTCGTGTATACTCAGATGAAACAGTGGTACAAAAGCCTTTTAATTGTGACTGTGGCAAGTCGTATAGATACAGAGCTGGCTTGTATACTCATAGAAAATTTGAATGTGGAAAAGAACCTCAATTCCCCTGTCCTGTCTGTTCATACCGAGCCACAAGGAAATCATCCCTAAAAGTACACATGTATAgTGAATTCCAAATGTTTGATGAGTCTAACAAATTTATTTGCCATTGTGGTAAGAAATACCGACATAGGAAGAGTCTTTGGAATCATACAAATTTTGAATGTGGTGGTAAAGAACCACAGTTTTCTTGTCCTTATTGCTCATACAGTGCTAGACttatatgTCCAGTGGACAGAacttttgttaaagaaaaaaagaataaaataactgGTTTGGCACCAAGAGTAAAGTTTGCCTGTGATTCGTGCTCTAGGAGTTACATGAACAAGGTATCCCTGTCCCGTCACAAGAGGTACGAGTGCGGTAAAGAACCTCAATTCAGTTGTCCTTATTGCCCTTACAAGTCATACCATAAATGTCACCTCAGActacatatatttcatattcataattcacatttacaataa
- Protein Sequence
- MVVSFSYKVNGSGEKYKLNNTPFFVCEVCQRSYRSKTGLYVHKKYYCGKEAQFKCPYCPYKAKQTVNLKSHVMLKHQRGENFYILWREPPLEHQFQCEACLKIYKSKAGFYLHQKFDCGKEPQFQCPQCPHKSKRKGDLKRHMATHFSAVIGNGYCCDKCGKNYSYSGSLKRHQKYECGKEPQFQCPYCSHKAKHRSNLKSHMIYMHSLPYVCTKCNKGYRIRQSLYSHQKHECGKDPQFHCPYCTYGAKQKASLKRHIICVADFPYVCNRCNKAYRIKNSFYKHQKFDCGLDPQFHCPHCSYRAKHKTSLKRHLIFKHLSSVVQISHMFVTGVIRDIDSRIAFTAIKMLPYVCTQCNKGYRIKQSLYSHQKHECGIDPQFPCPYCPYKAKQKPNLKRHIHFKHYVSSVVQCSLMFVTGVIRDIESRKAFTAIKTLPFVCTKCNKGYRIKQSLYSHQKHECGIDPQFPCPYCPYKAKQKPNLKKHIVLKHHQPAVQSSFHLSVKSVIEHTDLRIAFTVTRNMNVGRSRNSLVLTYVFEKSKVKSTGEDHLLIYLCILNLFVSNNECIFLGHYYASLKQKQFKCDTCEKAYTYKAGLYQHKKYECGKEPQFQCPHCPYRSKQKATMKTHICNVHLGNLSNSPYKANKLFFVPLIYKKKLTIQKEVSAVHLNNIAGKLGQTRVYSDETVVQKPFNCDCGKSYRYRAGLYTHRKFECGKEPQFPCPVCSYRATRKSSLKVHMYSEFQMFDESNKFICHCGKKYRHRKSLWNHTNFECGGKEPQFSCPYCSYSARLICPVDRTFVKEKKNKITGLAPRVKFACDSCSRSYMNKVSLSRHKRYECGKEPQFSCPYCPYKSYHKCHLRLHIFHIHNSHLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -