Hhal001726.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:9501-26205[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00019 0.0075 16.2 1.5 2 23 67 89 66 89 0.95 2 19 0.006 0.24 11.4 2.0 1 23 95 118 95 118 0.95 3 19 0.00038 0.015 15.2 1.9 1 23 124 146 124 147 0.95 4 19 0.02 0.81 9.8 2.0 1 23 153 176 153 176 0.97 5 19 0.00021 0.0082 16.0 1.1 1 23 182 205 182 205 0.96 6 19 0.0002 0.008 16.1 3.1 1 23 211 234 211 234 0.95 7 19 0.021 0.82 9.8 1.9 1 23 240 263 240 263 0.97 8 19 0.0063 0.25 11.4 1.9 1 23 269 292 269 292 0.97 9 19 0.0062 0.25 11.4 1.6 1 23 298 321 298 321 0.97 10 19 0.00071 0.028 14.4 5.1 1 23 327 349 327 350 0.96 11 19 0.01 0.41 10.7 9.4 1 23 356 379 356 379 0.96 12 19 0.056 2.2 8.4 0.4 2 23 386 408 385 408 0.94 13 19 0.0016 0.066 13.2 0.8 1 23 414 437 414 437 0.95 14 19 0.0075 0.3 11.1 3.3 1 23 443 466 443 466 0.97 15 19 1.6e-05 0.00065 19.5 4.3 1 23 472 494 472 495 0.96 16 19 0.16 6.6 6.9 5.5 1 23 501 524 501 524 0.97 17 19 5.8e-05 0.0023 17.8 2.4 1 23 530 553 530 553 0.97 18 19 0.0048 0.19 11.8 0.3 1 23 559 582 559 582 0.95 19 19 0.0011 0.045 13.7 3.6 1 23 588 610 588 611 0.95
Sequence Information
- Coding Sequence
- ATGCTTAATTGTGgTTTCCAGAATTCCCTCATTGAAAAAGAGTATTATATGaaagatgagaaaaatattgatttgggTAAATCTGAAACTCCCCTTCACGCATCTCctcagtataaaaataatgtgagaaaatgtaaagtaattcaaaaatgccaattgaaaaaacatattagCCATACCAAAAGAGAGAAGACTCAgcagtgtcctcattgtgattataaatcagttagtTCAACATATTTGAAAAGACATATAATGGCTCGTCACACAGGAATGAAGCCTTTTCAGTGTCttcaatgtaattataaatcagttacttcaaattcattaaaaatacatataatgggCTGTCACACAGGAGAGAAGCCTTTTgagtgtcctcattgtgaatataaagcaGTACGAAAAGCCCAATTGAAAAGTCATTTAATGGCCCATCATACAGAGGAGAGGCCTTTTCattgtcctcattgtgattataagtCAGTTATGTCTAATGATTTAGGAATACATATAATGCGCTTTCATACAGGAGAGAAGCCTTTtaagtgtcctcattgtgaatataaagcaGTACAAAAAGGCCAGTTGAAAACtcatataatggcccgtcacACAGGAGAGAAGCCTTTTCattgtcctcattgtgattataaatcagttactTCTAATGATTTAAAAAGACATATTATGGCCCGTCACACAGGAGAGAAGCCTTTtcagtgtcctcattgtgaatataaagcaAGTGATTCTACAGTATTAAGCATACATAAAAAGCGCTATCATACAGGTGAAATGCCTTTtcagtgtcctcattgtgaatataaatcaattgtttctagagatataaaaaaacatataatgcgCCGTCATACAGGAGAGAAACCTTTtcagtgtcctcattgtgaatataaatcaattgtttctagagatataaaaaaacatataatgagcCGTCATACAGGAGAGAAACCTTTtcagtgtcctcattgtgaatataaatccgTTACTTCTCATAGTTTAAAAAGTCACATTATGGCCCATCATATTGGAGAGAAGCCTTTTcattgtcctcattgtgaaCATAAATCAATTACTtctagttatttaaaaagacaTATAAGGCACCGTCATACAGGAGACAAGCCACTTCAGTGTTCCCAGTGTGAATATAAAGCAACAACTAATCAACTAATACAAAGACATATTATGGCCCGTCACACTGGAGAGAAACCTTTTCAGTGtgctcattgtgaatataaagcaGTTCAAAAAGGCCaattaaaaagtcatataatggcccgtcacACAGGGGAGAAGCCTTTTCAGTGTACTCATTGCAAGTATAGATCAGTTGGTTCTGAAGAATTAAAATCACATACAATGCGCTATCATACATTTGAAATGCGTTTtcagtgtcctcattgtgattataaatcagttgtTTCTTATGATTTAAAAAGACATATTAGGCGCCAtcatacaggtgagaagcctTTTCAGTGTTCTCATTGTGACTATAAATCAGTTTGTTCTACAGAATTAAAAAGCCATATAATGCGCCGTCATACAGGTGAGAAACCTTTTCAGTGCCctcattgtaattataaatcagTTACTTCTACAGATTTAAAAAGCCATATAATGAGCCGTCATACGGATAAAAAGCCTTTTCCATGTTCCCAGTGTGAATATAAAGCAATAActaatcaactattaaaaagACATATTATGGCCCGTCACACAGGAGAGAAGCCTTTTCAGTGttttcattgtgaatataaagcaGTTCAAAAAGGCCAATTAAAACGTCATATAATGGCCCATCACATAGGAAAGCAgccattttaa
- Protein Sequence
- MLNCGFQNSLIEKEYYMKDEKNIDLGKSETPLHASPQYKNNVRKCKVIQKCQLKKHISHTKREKTQQCPHCDYKSVSSTYLKRHIMARHTGMKPFQCLQCNYKSVTSNSLKIHIMGCHTGEKPFECPHCEYKAVRKAQLKSHLMAHHTEERPFHCPHCDYKSVMSNDLGIHIMRFHTGEKPFKCPHCEYKAVQKGQLKTHIMARHTGEKPFHCPHCDYKSVTSNDLKRHIMARHTGEKPFQCPHCEYKASDSTVLSIHKKRYHTGEMPFQCPHCEYKSIVSRDIKKHIMRRHTGEKPFQCPHCEYKSIVSRDIKKHIMSRHTGEKPFQCPHCEYKSVTSHSLKSHIMAHHIGEKPFHCPHCEHKSITSSYLKRHIRHRHTGDKPLQCSQCEYKATTNQLIQRHIMARHTGEKPFQCAHCEYKAVQKGQLKSHIMARHTGEKPFQCTHCKYRSVGSEELKSHTMRYHTFEMRFQCPHCDYKSVVSYDLKRHIRRHHTGEKPFQCSHCDYKSVCSTELKSHIMRRHTGEKPFQCPHCNYKSVTSTDLKSHIMSRHTDKKPFPCSQCEYKAITNQLLKRHIMARHTGEKPFQCFHCEYKAVQKGQLKRHIMAHHIGKQPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -