Hhal000696.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:102741-115363[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.043 1.7 8.8 1.9 1 21 131 151 131 152 0.93 2 22 0.0048 0.19 11.7 2.0 1 23 179 202 179 202 0.96 3 22 0.051 2 8.5 2.5 1 23 208 231 208 231 0.94 4 22 0.0029 0.12 12.4 3.3 1 23 237 260 237 260 0.95 5 22 0.058 2.3 8.3 6.7 1 23 266 288 266 289 0.96 6 22 0.0057 0.23 11.5 0.5 1 23 295 318 295 318 0.95 7 22 0.01 0.4 10.7 5.0 1 23 324 347 324 347 0.95 8 22 0.0014 0.057 13.4 2.5 1 23 353 376 353 376 0.97 9 22 0.003 0.12 12.4 4.1 1 23 382 405 382 405 0.95 10 22 0.15 6.2 7.0 0.6 1 21 411 431 411 432 0.93 11 22 0.39 15 5.7 1.2 11 23 433 445 431 446 0.85 12 22 0.0063 0.25 11.4 5.0 1 23 452 475 452 475 0.96 13 22 0.016 0.63 10.1 5.4 1 23 481 503 481 504 0.96 14 22 5.3e-05 0.0021 17.9 0.8 1 23 510 533 510 533 0.96 15 22 0.00048 0.019 14.9 0.3 1 23 537 560 537 560 0.97 16 22 0.00051 0.02 14.8 2.3 1 23 566 589 566 589 0.95 17 22 0.00046 0.018 14.9 5.1 1 23 595 618 595 618 0.97 18 22 0.0013 0.053 13.5 5.3 1 23 624 647 624 647 0.95 19 22 0.0092 0.37 10.9 7.7 1 23 653 675 653 676 0.96 20 22 0.0013 0.053 13.5 1.9 1 23 682 705 682 705 0.95 21 22 0.0013 0.052 13.5 1.4 1 23 711 734 711 734 0.95 22 22 0.00041 0.016 15.1 0.6 1 23 740 763 740 763 0.95
Sequence Information
- Coding Sequence
- ATGCATCAACCAATATTCTGCATGAATAGCttggaattttcaataaaagaagaagttaTGGATGAAACTGAACCTAatggTATGAATAGCTTGGGAATTTCTATTAAAGAAGAAGTTCTGGATGAAACTGAACCTTAtgATATGAATAGCTTAGGAATTTCTAGAAAAGAAGAAGTTACTGATGAAACTGAAACTAatgTCCCGGCAATTGATATCAAAGAAGAGGAAAGACTGGACATTTACTGTGGTGGCCATGTTCATGTTAAACAAGAAGAAGAGCTACTTGTTCCAGATGATGATGCTCAAGACTTGCTCAATGAGACGTATCAGCTGAATGGAAAGATGGATTATAACTTTCCTGTAATGAATCATCTTACAAGTGAGAAGTCCCATCAGTGTACTTGTTGCGGCTACAAAACAAGCACACCttttgatttaagaaaacatGTAATGGCATGTAATTCAGTCAAAAAGCCCCATTtggaatataaatcaaataaaaaaaaaattacccattATACTGGTGAGAAGAGATATCAATGTGCTCACTGTCAATATAAAAcagttcaaaaatatgttttaagacaacatataatggcccgtcatactggtgagaagcctcatcaatgccctgattgtgaatataaagcagttaaaatatgtaatttaaacagACACCGAATGGCCCGTCATAGTGATGAGaggcctcatcaatgtcctcattgtgaatataaatcggTTTTCCAAAGCAATGTGAAGAAACATATAATGGCACGtcatactggtgagaagcctcatcagtgtcctcattgtgaatacaGAACAGCtagatttgataaaataaaatcacatctAAGATCTCATCATACTGgcgagaagcctcatcaatgtccttattgtgaatataaagcaGTTCTACAGGGcactttaaataaacatataatggcACGTCATACTGGTGAAAAGCCTCatcagtgtcctcattgtgaatataaatcagttggAAAAAGTGATTTAAACAAACACAGAATGGCCTGTCATACTGGTGAGAgacctcatcaatgtcctcgtTGTGAATATAAGTCAGTTAACCATGGCAATTTGATTAAACATATAATGTCCCGtcatactggtgagaagcctcatcaatgtcctcattgtgaatataaatcagtatACCATggaaatttgaataaacatataatgGCACGTCATACTGGTGTGAAGCTTTATCTATGTTCACATTGTGAATATAAGACAGCTATATCTGATAGTTTTAGTAGACATATTAAGAGCTGTCAGTCAGtcaatttgaataaacatataatgACGCATCATTCTTGTGAGAAGCCTTATCAATGtgctcattgtgaatataaatcagttcaCAAGCATCTTTTAAATAGACAcataatggcccgtcatactgctcagaagcctcatcaatgtccacATTGCGAGTACAAAACTGCTAgatctgataaaattaaattacatataagtaCTCAtcatactggtgagaagcctcatcaatgtccttatTGTGAATATGGATCTGTTCAACTCAGCAATTTAAATAGACACATAAAGGCCCGTCATACTAGTCCTCATCAATGTCCAGATTGTGAATATAGATCAGTTGAACTTAGcagtttaattaaacatataatggtacgtcatactggtgagaagcctcatcaatgtcctcattgtgaatacaAATCAGTTGGAAAAAGTGATTTAAAGAAgcatataatggcccgtcatactGATGAAAGACCTCATCAAtgccctcattgtgaatataagaCAGTTAATCATGGcaatttgaataaacatattatgtcccgtcatactggtgagaagcctcatcaatgtccccattgtgaatataaatcagttttccaaagtaatttaaataaacatataatggcATGTCATACTGAAGAAAAGCCTTATCAATGTTcacattgtgaatataaaacgGCTAGatctgataaattaaaatcacatcTACATTCTCATCATACTGgcgagaagcctcatcaatgtcctcattgcgaatataaatcagttcagCTTGGcactttaaataaacatataatggcACGTCATACTGGTgaaaagcctcatcaatgtcctcattgtgaatataaatcagttggGAAAGGTGATTTAAACAAACACATAATGGCGCGGCATACTGGTCAGAAGCCTCACCAATGTCcttattgtgaatataaagcagtttataatggcaatttaaataaacatataatggcACGTCATACTAGTGAGAAGCTTCATgtataa
- Protein Sequence
- MHQPIFCMNSLEFSIKEEVMDETEPNGMNSLGISIKEEVLDETEPYDMNSLGISRKEEVTDETETNVPAIDIKEEERLDIYCGGHVHVKQEEELLVPDDDAQDLLNETYQLNGKMDYNFPVMNHLTSEKSHQCTCCGYKTSTPFDLRKHVMACNSVKKPHLEYKSNKKKITHYTGEKRYQCAHCQYKTVQKYVLRQHIMARHTGEKPHQCPDCEYKAVKICNLNRHRMARHSDERPHQCPHCEYKSVFQSNVKKHIMARHTGEKPHQCPHCEYRTARFDKIKSHLRSHHTGEKPHQCPYCEYKAVLQGTLNKHIMARHTGEKPHQCPHCEYKSVGKSDLNKHRMACHTGERPHQCPRCEYKSVNHGNLIKHIMSRHTGEKPHQCPHCEYKSVYHGNLNKHIMARHTGVKLYLCSHCEYKTAISDSFSRHIKSCQSVNLNKHIMTHHSCEKPYQCAHCEYKSVHKHLLNRHIMARHTAQKPHQCPHCEYKTARSDKIKLHISTHHTGEKPHQCPYCEYGSVQLSNLNRHIKARHTSPHQCPDCEYRSVELSSLIKHIMVRHTGEKPHQCPHCEYKSVGKSDLKKHIMARHTDERPHQCPHCEYKTVNHGNLNKHIMSRHTGEKPHQCPHCEYKSVFQSNLNKHIMACHTEEKPYQCSHCEYKTARSDKLKSHLHSHHTGEKPHQCPHCEYKSVQLGTLNKHIMARHTGEKPHQCPHCEYKSVGKGDLNKHIMARHTGQKPHQCPYCEYKAVYNGNLNKHIMARHTSEKLHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -