Hhal012301.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:22376-37648[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.83 33 4.7 0.1 1 22 283 304 283 305 0.82 2 12 3.3e-05 0.0013 18.5 1.7 1 23 313 335 313 335 0.99 3 12 0.0021 0.085 12.9 0.7 1 23 342 364 342 364 0.97 4 12 2.9e-05 0.0011 18.7 0.2 1 23 370 392 370 392 0.98 5 12 1.6e-05 0.00064 19.5 1.1 1 23 399 421 399 421 0.98 6 12 2.2e-05 0.00089 19.1 2.4 1 19 427 445 427 449 0.93 7 12 2e-05 0.00081 19.2 0.2 1 23 455 477 455 477 0.98 8 12 5.8e-06 0.00023 20.9 0.8 1 23 483 506 483 506 0.96 9 12 0.00033 0.013 15.4 0.3 1 23 512 535 512 535 0.95 10 12 1e-05 0.00041 20.1 3.0 1 23 541 563 541 563 0.99 11 12 9.8e-06 0.00039 20.2 0.5 1 23 569 591 569 591 0.97 12 12 0.00015 0.006 16.5 0.2 1 23 597 621 597 621 0.94
Sequence Information
- Coding Sequence
- atgacacaaGATTCAGAGAAGGGAAGTACAGTTTGTCTGGTCTGTAATGCCAGTATTGGTGTATCAACAAGAAATTGTTGTccaatatttaagtttaatgtcACTTCTTCTGAACAGCCTGTAGCAAATATACTTAGTGTTATACTTGGACAAGAAGTGAGAAAAGAGATTGTGCATAGTGATATCATCTGTAAAAAGTGCTATAAATTGTGTAATGAAGTTGATGAACTACAAGAACGGTTGACTGAGATTAAAATGgagcttaataattattaccaaaGAACATTAAGaaaattggaAGGTGGAGAAGATGAAGAAGACCCAAACACTGGTCAGATAATATATATACCGAAAACTAAACCCCCAGGGCCATCTGGAAGGAGGCCCGGTCGGCCAAGGAAAAATCCACCTCCTGTTAAAATGGTTGTTGAAAATGGAGAAGAGGATGTCGAAATGGTTGAAGAAGCTTTAAGTGAAGAAGACGATGTAAGGGGAATCGGAATGGATGATGTAACCGATGCAGATTATATTCCTACGAATAGGCCGCGTCCCCCTGATGGTTTGAGGAGAGTGCAAGAAGTTCTTATGTCAGGGAATAATGAAGTACAGATAAAACTAGAAGCTGTTGAAGAGGACAGCCAATCATCTGACcaaaaaaacatgttaaataaaaagaaattgattaataaaaaaaaggattcagATGTACCAGCAGTTATTCCACAAATGATCGTGAGTAGAGATAACAAAGTTTATACTTGTTTGATTTGTTCAGCAGATGAGAAAGTACAGGGTGATGCTAAGACAATAATATCACATATGAAAAGTGCTCATGAAATCCGACTTTATATTTGCGATATATGTGgtgtagaatttttaaaaagagccGAAATGTCTGCTCATTTTGACGAGCACGTAGCCACTGAAGAAGGAGACTTTCAGTGTGACGTTTGCAATAGGATATTCACCAACCTCAGGCTCTTTAGAGTTCACAAGAGAATGCACATGCCTCAACCGAAGAATCATGTTTGTGAAACATGTGGAAAGGGctttttATCTCGTAATATGTTGGATGAACACATGAATATGCACACTGGACTGAGGCCGTATAAATGCGGTGAATGTGGAAAGGACTTTGCTTCTAAATATTCAGCTAAAGCTCATGAAAAAATCCATCTTGATAGACCTCGGCCTTATAAATGTGCAACTTGTGGAAAAGCTTTTATAACTGAACAAAATCTTCATCAGCATGAAAAGATACACACTGCTATTCGCTCTCATACTTGTCAGATAtgtgGTAAATCATTCAGCTCTTCAAGAAATTTGGAAGTGCATTGTGTCATTCACACTGGATATAAACCGTTCATCTGTAGAGTATGCGGTAAAGCATTTGCTCGCAAAGCTGAGATACGAGACCATGAACGCACCCACACTGGGGAAAAGCCATACCAATGTGAATTTTGTGGAGCTACATTTGGgCAAAGAAGTAATCTTCAATCTCATAAGAGAGCTACTCACTATGACGACAAAAGGTACCAATGTATTGAATGCGGTAAAGCGTTCAAACGCCGTAGGCTACTTGATTACCACATTAAGGCAGCGCACACTGGCGAGCGCCCTTACAAATGTCAAATCTGCAATGCCACCTTCATCTATCCTGAGCATTTCAAAAAACACCGAAGGATTCATACTGGAGAGAAACCATATCAGTGTGAAGTCTGCGGGAAAGCTTTTAATAGTCGTGATAATCGAAATGCACATAGATTTGTGCACAGCGATAAGAAGCCATATGAGTGTCTTGTTTGTGGAATGGGCTTCATGAGGAAACCTCAGCTGTACAATCACATGCAAACTCAGGGCCATGTTAATGATACAATAGTTGTGAACCAACCTCGCCTCACAACAGATGAAGATTTTATTCAGCAAGCGACTGAAGATGTTCAAGTAGAAATGTCTATGCTTGAAGGCAACCATCCCAAGTGGCATAATGACCCAGTCCTCGATGACAATGATGGTGATGGTGCTCAGGACACTAAAATGTACATCAGTGAGCTGAAGGAGCATGTAATAATCCAGGGCAAAGCTCAGGGTGTTACGGAAAATGGCCAATACCAGGAACAAGTGGGCCATCTCATTATTGATGGGCAGGTGCACTTTGCCGACGGTGAGTCGCTGGAACTTGAAGGAGGGTCTTCACTGGCAGAAACTTTGGAGCAGCACTCGCTTGTAGGGAACGGAGATTACACAGTGGAAGCAGGCAGCGGTACGACTACAGTACAAACCCCGAATGGGCCCGTCCACCTGGTTCAGATCAGCCTATCGGACACTGCAGACCATCAGGCCACAACCTGGTTCAATCTGGTGCACCAGTAG
- Protein Sequence
- MTQDSEKGSTVCLVCNASIGVSTRNCCPIFKFNVTSSEQPVANILSVILGQEVRKEIVHSDIICKKCYKLCNEVDELQERLTEIKMELNNYYQRTLRKLEGGEDEEDPNTGQIIYIPKTKPPGPSGRRPGRPRKNPPPVKMVVENGEEDVEMVEEALSEEDDVRGIGMDDVTDADYIPTNRPRPPDGLRRVQEVLMSGNNEVQIKLEAVEEDSQSSDQKNMLNKKKLINKKKDSDVPAVIPQMIVSRDNKVYTCLICSADEKVQGDAKTIISHMKSAHEIRLYICDICGVEFLKRAEMSAHFDEHVATEEGDFQCDVCNRIFTNLRLFRVHKRMHMPQPKNHVCETCGKGFLSRNMLDEHMNMHTGLRPYKCGECGKDFASKYSAKAHEKIHLDRPRPYKCATCGKAFITEQNLHQHEKIHTAIRSHTCQICGKSFSSSRNLEVHCVIHTGYKPFICRVCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFGQRSNLQSHKRATHYDDKRYQCIECGKAFKRRRLLDYHIKAAHTGERPYKCQICNATFIYPEHFKKHRRIHTGEKPYQCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGMGFMRKPQLYNHMQTQGHVNDTIVVNQPRLTTDEDFIQQATEDVQVEMSMLEGNHPKWHNDPVLDDNDGDGAQDTKMYISELKEHVIIQGKAQGVTENGQYQEQVGHLIIDGQVHFADGESLELEGGSSLAETLEQHSLVGNGDYTVEAGSGTTTVQTPNGPVHLVQISLSDTADHQATTWFNLVHQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01298608;
- 90% Identity
- iTF_00165388;
- 80% Identity
- -