Hhal001727.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:98222-112337[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00024 0.0094 15.9 6.0 2 23 137 158 136 158 0.97 2 18 0.0068 0.27 11.3 5.9 1 23 164 187 164 187 0.96 3 18 7.6e-05 0.0031 17.4 2.1 1 23 193 215 193 216 0.96 4 18 0.00014 0.0055 16.6 2.5 1 23 222 244 222 245 0.95 5 18 0.00067 0.027 14.4 2.1 1 23 251 274 251 274 0.97 6 18 0.0003 0.012 15.6 0.5 1 23 280 303 280 303 0.96 7 18 0.00019 0.0074 16.2 2.8 1 23 309 332 309 332 0.98 8 18 0.00044 0.018 15.0 4.3 1 23 338 360 338 361 0.96 9 18 0.0042 0.17 11.9 4.8 1 23 367 390 367 390 0.96 10 18 0.01 0.4 10.7 3.1 1 21 396 416 396 419 0.94 11 18 0.0017 0.067 13.2 1.4 1 23 425 448 425 448 0.95 12 18 7.6e-05 0.003 17.4 0.9 1 23 454 477 454 477 0.97 13 18 0.0064 0.25 11.4 6.6 1 23 483 506 483 506 0.95 14 18 0.015 0.59 10.2 1.8 1 23 512 535 512 535 0.95 15 18 0.004 0.16 12.0 2.0 1 23 541 564 541 564 0.96 16 18 0.00081 0.032 14.2 1.8 1 23 570 593 570 593 0.96 17 18 0.00088 0.035 14.1 4.5 1 23 599 622 599 622 0.96 18 18 7e-05 0.0028 17.5 2.3 1 23 628 651 628 651 0.98
Sequence Information
- Coding Sequence
- ATGGCAGATGAAACTGGATCTGCTTgtttaaatgtaaaagaagAGATGGCAGAGGAAACTGGATATGTTTaTGAGTTCATTCCAGTAAAACAGGAAGAAAAGCTGCTTACACCAGATGACGaTGAGTTCGTTCAAGTGAAACAGGAAGAAGAGCTTGTTATACCAGATGACGTTCACACGATTGTTATCAAACAAGAGGAAGGACTAGAGTATAATTATGGTGTCAATGATTCCGACGTCGAAATGGAGAGTTActtgaaagatgaaataaacattGATTTAGAGAAATCTGAAAACACCTATCAAGAAACTTCTCAGTTTGAGGATGAATGCAGCAGAGATAAAGCAAcacaaaattcttatttaaaacaaaatatactcaGCCATCACTCAGATGAGAGTCCTCTTCAGTGTCCTCATTGTCACTATAGAGCAGTACATAGgggtaatttgaaaaaacatatgaaCCGCCACACTGGGGAAAAGCAGCATCATTGTTCTCATTGTGATTACAAATCAGTCACCTCTGCAGAATTAAGAAGACATGTAATGCGCCGTCATACAGGTGTGAAGCCTTTTCAGTGCCCTCATTGTGAGTATAAAGCAGCACAAAATAGCCaattaaaacaacatataatgGCCCATCACACAGGTGAGAAGCCTTTTCAGTGCCCTCATTGCGAATATAAATCAGTAAGAAATGGCCaattaaaacaacatatattaGGGCATCACACAGATGAAAAGCCTTTtcagtgtcctcattgtgaatataaagcaATACAAAATGTCCATTTAAAACTGCATATAATGTCAAATCACACAGGTGAGAAGCCTTTTCAGTGTCcacattgtgaatataaagcaATACAAAATGCTCAATTAAAACAGCATATAATGGCCAATCACACAGGTGAGAAGCCTTTTCAGTGCCCTCACTGTGAATATAAAGCAGTACAAAATGTCcatttaaaacaacatataatgACTTATCACACAGGTGAAAAACCTTTTCAGTGTCcacattgtgaatataaagcaATACAAAATGCTCAATTAAAACACCATATAATGAGTCATCACACAGGTGTGAAGCCTCACCattgtcctcattgtgattataaatctgtTGGTTCTACGGAATTAAAAAGGCATATAATGTCCcgtcatacaggtgagaagccttttaattgtcctcattgtgattataaatctgtTGGTTCTACAGAAttaaaaagacatataatgtgccgtcatacaggtgagaagcctTTTAATTGTCCTCATTGTGAGTATAAAGCAATACGAAATGCCCATTTAAAACTACATATAATGGCCAATCACACAGATGATAAGCCTTTtcagtgtcctcattgtgaatataaagcaGTACGAAATGGCCaattaaaacaacatataatggtccgtcacacaggtgagaagcctcatcattgttctcattgtgattataaatcagttactTCTACAGAATTAAAAAGACATATAATTCGCCGTCACACAGGTGAGAAGACTTTTCAGTGTCCTCACTGTGAATATAAAGCAGCATTAAAGAGCCatataaaacaacatataatgGCCAATCACATAGGTGAGAAGCCTTTTCAGTGtactcattgtgattataaagcaCTACAAAATGCTCAATTAAAGCAGCACATAATGACCAATCACACAGGTGAAAAACCTTTTCAGtgccctcattgtgaatataaagcaGTAAAAAATGCCcatttaaaacaacatataatgGCCAATCACACAGGTGAGAAGCCTTTtcagtgtcctcattgtgattataaagcaGTACGAAATTGCcatttaaaacaacatataatgGCCCTTCATACAGGTGAGAAACCTTTtcagtgtcctcattgtgaatataaagcaGTACGaaatgacaatttaaaatatcatttaaagaccAATCATATTGGTGATAAGCCTTTTTAG
- Protein Sequence
- MADETGSACLNVKEEMAEETGYVYEFIPVKQEEKLLTPDDDEFVQVKQEEELVIPDDVHTIVIKQEEGLEYNYGVNDSDVEMESYLKDEINIDLEKSENTYQETSQFEDECSRDKATQNSYLKQNILSHHSDESPLQCPHCHYRAVHRGNLKKHMNRHTGEKQHHCSHCDYKSVTSAELRRHVMRRHTGVKPFQCPHCEYKAAQNSQLKQHIMAHHTGEKPFQCPHCEYKSVRNGQLKQHILGHHTDEKPFQCPHCEYKAIQNVHLKLHIMSNHTGEKPFQCPHCEYKAIQNAQLKQHIMANHTGEKPFQCPHCEYKAVQNVHLKQHIMTYHTGEKPFQCPHCEYKAIQNAQLKHHIMSHHTGVKPHHCPHCDYKSVGSTELKRHIMSRHTGEKPFNCPHCDYKSVGSTELKRHIMCRHTGEKPFNCPHCEYKAIRNAHLKLHIMANHTDDKPFQCPHCEYKAVRNGQLKQHIMVRHTGEKPHHCSHCDYKSVTSTELKRHIIRRHTGEKTFQCPHCEYKAALKSHIKQHIMANHIGEKPFQCTHCDYKALQNAQLKQHIMTNHTGEKPFQCPHCEYKAVKNAHLKQHIMANHTGEKPFQCPHCDYKAVRNCHLKQHIMALHTGEKPFQCPHCEYKAVRNDNLKYHLKTNHIGDKPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -