Hhal005503.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:479284-496573[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.1e-05 0.00043 20.1 0.8 1 23 114 136 114 136 0.97 2 15 0.00014 0.0057 16.6 0.8 3 23 144 164 143 164 0.99 3 15 3e-05 0.0012 18.7 0.3 1 23 247 269 247 269 0.98 4 15 0.00071 0.028 14.4 0.2 1 23 275 298 275 298 0.93 5 15 0.009 0.36 10.9 1.2 1 23 312 334 312 334 0.94 6 15 1.5 60 3.9 2.0 3 21 348 366 346 368 0.83 7 15 0.00026 0.01 15.7 1.3 1 23 375 398 375 398 0.97 8 15 5.1e-05 0.002 17.9 3.7 1 23 402 424 402 424 0.96 9 15 2.2e-05 0.00088 19.1 3.7 1 23 430 452 430 452 0.98 10 15 0.02 0.79 9.8 0.1 2 23 462 484 461 484 0.93 11 15 0.00034 0.014 15.3 1.3 1 23 492 514 492 514 0.98 12 15 0.00013 0.005 16.7 0.2 1 23 520 542 520 542 0.98 13 15 1.7e-05 0.00067 19.5 0.4 1 23 548 570 548 571 0.96 14 15 0.1 4.1 7.6 0.0 1 23 583 605 583 605 0.95 15 15 8.2e-06 0.00033 20.5 0.2 2 23 856 877 855 877 0.97
Sequence Information
- Coding Sequence
- ATGGCAAACACTATTGTTATGACTGAAGAAGGATATGgttttaattatgaatggaTTGCTGCTGGTTCTGGAATTGGTGAAGAAATATGTGGAGTTGATAAAGATTGTATTGTTGTTCCCTCTTCACCAGAATTgcataaaattcaaattgaacCTCCAGAATTAGGGGATGATTACGTAGAAATTCAGGTTACGGAGGAAGAGGTAGTCACAGACCAATGGAATTCTCATGCGGGGTCAGAAGAAGACGGTTTAAACCTAAATGTTGATACTAACCATGACGATGATGTTATGGTTCCATTGCCTGAAGATCAAGATGAATATTCTAGGCTTCATCCATATCCTTGTGACTTCTGCAGTAGAAGgtTTAGCAAAAAATCTGCCCTAACTGTGCATATGGTTTCTCATCAAGTAGAGCGACCCCATGGTTGCAATATGTGTGGTGCTCAGTATAGGCGTAAACATGATCTGGTAGAGCATATGAAAATTCATGCATATGCTCCTATCAAAATTGAACCTGAAGATGATTATGAAGAATTACCTACATTACCCCAAGCCAAAGCAAAACAAAGAGCTCGTCGAAAAAAAAGGAGcatgaaaaaatttgaatttgatgaAACTATAGctcgggaaaaaaaaactagaccTCCTCAGATTCCTTTTGATGATTTCAAGTTTGAAATTGATATACCTCAAGTAGAAGTACCTAAATTTCCTATAATAGATCCCTCAAGACCATATGTTTGTCAACACTGTGGAATTGGATTCGCTCGAGAAAAAGCCTTGACCTCGCATACTATGATACACGTTGGAGATTCAGCATATGAATGTGAATCATGTGGTGAAATGTTTCAATCTGAAAGTCAACTTGAGCAACACAATTCAATCAGACATGGACAAGTTTCTCGGAAAAGAGATGATAATTATGGTACATTTCTTTGTAATGAATGTGGTGCTTCATTCCAGTGGTATAATCAACTGAAAAAACATCGGAAGTCTCATATAAAACAAGAGGAACAAGAAGATGAGGAAAACCATCTGTGTACGTTATGTAATGTTGTATTTAATACTCTAGACGAACTTTTATGTCATAAAGAAGATCACGATCCTGAAATAGGAGTCCATTCATGTTACCTTTGCGGAGAAgtttatgaaaatatgaCAGATCTCAAAGATCATATGAAAACAAGACATAAAGCTAATCATATGTGCCACCTTTGTGAAAAGATGTTTAAAGATAGTAAGGCTTTAAATAAACATCTTGCCTCACACATCGAAACCAGAACATTTCCTTGTTCTATCTGTTCAAGGAGGTTCCACAATAAAGCCAAGTTGAAAAaACATATGATGAGCCATGATGATATGAAACCAAATGGTGGAATGGTTTGCCGTGAATGCGGTGAGATGTTCACTGAAGGTCAAAGTCTTTTGAATCACAGGCAAGCTGTTCATGGTGTCAATATCTCTCGAATGTTTCCTTGCTTACAATGTGGCAAGGCATTCAATTCACGCTCTTCTCATCAGatACATTTACGTATTCACACTGGTGAGAGACCATACGCTTGCAAATATTGCTGGAAAGCATTTGGGGATGGTGGCACCCTACGGAAGCATGAACGAATCCATACTGGGGAAAAACCTTATGTCTGCCCTGTTTGTACAAAAGCTTTTAATCAGAGGgtCGTTCTTCGTGAGCATATAAGGGCACACCATTCTGGCTCAGAAAGTCGCCTTAGTAACAACTGCTATGAGTGCATGGTATGTGGCTCGGTTCTTGCTGCATCAAGTGAACTATGTGCTCACCTAGTTCTTCACTCTGATGAAAATACTGCTAAGCACCGTATGCCAAAGGGTAATAGGAAGTATGTTCGTAAAAAGAAATACACAGGATTTGAAGAAGATAGTGGCTCACCCGTGGAAGAAGATAGAAGGAAGACACAGATGCCTTCACCTCCACCACCTCCTACACAGATTGTTAAGTATTCTGAAGAATTAGACACTGTAATTAAGATTGAGCCTGGATTAACACCTACAAATACTGATCTTAATAAAGGCAGGGCTCGTATTGTACGGTCTGGAAGAAAAGGGGTCCCAAAAGGTCAAAACAAAAGGTATGCTAGGGGTAAAACAAAAGCTGCTCGTTTGATGAATAATACATCATATGCTTCAAAGTATGTGGTTTCTTGTCCTGAAAATCAAGAAGTAGCACCTAGCCAAGAAAGCAGTTTAAATGGAATAGTTCCTAGAAGTCGACCGCGAACGAAAAATGTTAGTTACCATAATATGAAAGCCGAACCTAGATATGAACTTGCTACATTTCCTGTGGACAATAAAAGAAGTTCTGGGAACCAAAAAAAGAGATCCCAAGTGAGGAGAGATGTTCCCCCTTCAGAAGCTGTGGAAAATCAATATGTAAATGGAATAGACCTCTTTGAAGAAACAGGTGGTGAGCAAATAGAGACGTGTATTGTAGACGATATTGATGTTGAGCTTAAATTAGAAGTGAAGACTTCTGAACCAGAAGAATGCCTCATTTCTCCAGATGACATTAAAACAGAGCTTGTTTCATGTGACATGTGTTCTGAAGTTTTTACAAGTAGATCCGATTTGTTGAAACATATACAGATACATATATAG
- Protein Sequence
- MANTIVMTEEGYGFNYEWIAAGSGIGEEICGVDKDCIVVPSSPELHKIQIEPPELGDDYVEIQVTEEEVVTDQWNSHAGSEEDGLNLNVDTNHDDDVMVPLPEDQDEYSRLHPYPCDFCSRRFSKKSALTVHMVSHQVERPHGCNMCGAQYRRKHDLVEHMKIHAYAPIKIEPEDDYEELPTLPQAKAKQRARRKKRSMKKFEFDETIAREKKTRPPQIPFDDFKFEIDIPQVEVPKFPIIDPSRPYVCQHCGIGFAREKALTSHTMIHVGDSAYECESCGEMFQSESQLEQHNSIRHGQVSRKRDDNYGTFLCNECGASFQWYNQLKKHRKSHIKQEEQEDEENHLCTLCNVVFNTLDELLCHKEDHDPEIGVHSCYLCGEVYENMTDLKDHMKTRHKANHMCHLCEKMFKDSKALNKHLASHIETRTFPCSICSRRFHNKAKLKKHMMSHDDMKPNGGMVCRECGEMFTEGQSLLNHRQAVHGVNISRMFPCLQCGKAFNSRSSHQIHLRIHTGERPYACKYCWKAFGDGGTLRKHERIHTGEKPYVCPVCTKAFNQRVVLREHIRAHHSGSESRLSNNCYECMVCGSVLAASSELCAHLVLHSDENTAKHRMPKGNRKYVRKKKYTGFEEDSGSPVEEDRRKTQMPSPPPPPTQIVKYSEELDTVIKIEPGLTPTNTDLNKGRARIVRSGRKGVPKGQNKRYARGKTKAARLMNNTSYASKYVVSCPENQEVAPSQESSLNGIVPRSRPRTKNVSYHNMKAEPRYELATFPVDNKRSSGNQKKRSQVRRDVPPSEAVENQYVNGIDLFEETGGEQIETCIVDDIDVELKLEVKTSEPEECLISPDDIKTELVSCDMCSEVFTSRSDLLKHIQIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00165382;
- 90% Identity
- iTF_01298601; iTF_00165382;
- 80% Identity
- -