Hhal003731.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:1236114-1260221[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 7.9 3.1e+02 1.6 0.3 2 16 287 301 286 303 0.86 2 22 1.4e-05 0.00056 19.7 1.3 1 23 509 531 509 531 0.99 3 22 1.8e-06 7.2e-05 22.5 1.3 2 23 538 559 538 559 0.98 4 22 9.1 3.6e+02 1.4 0.2 1 20 562 581 562 583 0.88 5 22 0.024 0.96 9.5 1.4 1 23 589 611 589 611 0.97 6 22 1.5e-06 6e-05 22.8 1.1 3 23 618 638 617 638 0.97 7 22 1.6e-07 6.5e-06 25.8 5.4 1 23 644 666 644 666 0.99 8 22 0.00063 0.025 14.5 1.3 2 23 670 691 669 691 0.97 9 22 0.018 0.7 10.0 4.3 2 23 696 716 696 716 0.94 10 22 0.00014 0.0055 16.6 4.1 1 23 749 772 749 772 0.97 11 22 0.0035 0.14 12.2 0.1 2 23 857 879 856 879 0.94 12 22 0.0086 0.34 10.9 0.7 2 23 921 942 920 942 0.97 13 22 0.0036 0.14 12.1 2.0 1 23 948 970 948 971 0.95 14 22 0.00094 0.037 14.0 1.9 1 23 977 1000 977 1000 0.98 15 22 0.00074 0.03 14.3 0.5 1 23 1006 1029 1006 1029 0.96 16 22 0.012 0.46 10.5 3.7 1 23 1035 1057 1035 1058 0.96 17 22 0.0014 0.054 13.5 5.0 1 23 1064 1087 1064 1087 0.96 18 22 0.033 1.3 9.1 2.8 1 23 1093 1116 1093 1116 0.96 19 22 0.0016 0.062 13.3 2.7 1 23 1122 1144 1122 1145 0.96 20 22 1.3e-05 0.00051 19.8 4.0 1 23 1151 1174 1151 1174 0.98 21 22 4.7 1.9e+02 2.3 2.7 1 23 1180 1203 1180 1203 0.92 22 22 0.013 0.54 10.3 2.7 1 23 1209 1232 1209 1232 0.96
Sequence Information
- Coding Sequence
- ATGCTGCAGTTTCAGGATAATGATCAGGATATCCCATCTAccgaaaatagtttatttttatctcagtCTATGTTAAACACAGTctgtaatgatttaaatattaatgaatcgGAAGGGTTGTGCTTGCAGGGGAATGTTCCTcctgaaaaagaattaaattttggaCCCATGCCCTGTTCCTGTAGTTCCTTGCCAACAACATTTTCAGATTCTAACTGGAATATCGGTTACCAATTTGGTGCAAATCAGTTCACTCCTTCACCTTATTGCTTATTTGAACAGCAAAGTAAGAAACAGACAGAATGTGCTCTACCTTCTGCTTTAAGTGATATTGAACCATTTATGGGaaaagaaattgataataaGCACAATGATTATGGTATTTTTTCTGGGAAACAAGGTCCAAGCAATACCTCTAGTGATTGCAGACTTCTTAGTTGTATCCAATCACAACAACCTCTCAACATATCAGTGTACAATTCTTCATTTCCAACACAAGATTCCTCTCTGTTACAGTTTAGCACTGGTAATACTAATACCTATAATCTTTGTTTGGATTCTGATTGCCTTGATAGGATTTGTAGCCCTTCAAGAAATCAGTATTCTTCTTGTATGCTTGACCAGAATTTGGATTTCAATACCTTGAGGGCAGAAAACATAGGACAAGTTAATGACAAGCttgatttatctaattttatggCAATGAATAATGATGAAGAAACTATACTGAATGTAAATGAAAGTGATGAAGACAGTGAGATCATTGTAGAAGACTCTGATACTGAAAGTgaagtttCTATTGATGTGGGACCTTATATTGAGGATAAAGAAAAAGATCAACCCAAAAagtttgttatgaaatgttttgtgtgtaatttatcttattctgaaaaatttgattttattcaagtGAATAGTTCATTTCCTTTAACATTTATATCTCAAACACCAGTAATGTTAAAACTTATAGAAATAATACCCACAGACTTGCAAACATCagtgaaatttgaaaacaatctAATTTGTAAAAGATGTCTTAGTCTAATTGACATGGTTGAGAACTTGGAAGTAAGACTTATTAGTTCTAAGAAAACCATTTGTGAATATGTTTGTCGCTCAAGTAAAGAAGTATCTGATGAAGATTGGAGTTTACTTCAGGGAAGTAATGATATCTGTATCGATGATAGTATAGGACCCTTAATCTCAAAAGAGGTTGTTCAAACTGGAGCTGTTGTGGAAAATGGGAATACTGTAGAAACCTTTAGCAGTAAGGATAAAAATGTGGATGATGATGTGATAAGAAAAACTGTGACTGGTTCAATTGATATTCAACCTCCTCATGAAAATTCAAAAGATGCTATCAATAATAAAGAGaacactattaatataatagaagaGAACAATGATAAAGTCTTGAGTGAACATccaataattagtatttataaagataatttgaGTTCAAAAGTAAATTCTGACTCTTCTATAAAACTGTATCCTAAAATTCAGCCATCTGTAGATTTTAAGTATCAATGTGATCGTTGTGGAAAATTTTACAGACGAGAAAAGGAATTGGCTGTTCATCTCAAAAAACATATGGgggaatttttggaaaaatgtacAGAATGCGGCaaaggatttatgaaaaaatctaaTCTGGAAATACACCTTAGGAAACATAGAAAACATATTTGCCTTAATTGTAGGGCTAGTTTTGTATCTGATATAGAACTAGCTGATCATTCAAAACATTGTAcaggaaaaaaatttacttgttctcAGTGCAAACTTGTTTTCTCCTCCGATCTCAAGTTAGAAAGTCATAAAGAAAAACACAAAGTAGGTACTAATAATTGTTCCAtttgtaataaatcatttaaacatCCAAGCTACCTTGTAGCCCACATGATAAGTCACTCAGATAAAAAACCTTTCACCTGTGAAAAATGTGgaagaagttataaaaatcaGAGTCATTtaaaaagacatttaaaaacTCATTCTGGATTGACATGCCACATCTGTCAACAACTATTTTCATTTCCTGCTCAATTGAAAAGTCATTTAAGTATGCATGCTGAAGAAGAGGAATgtgatatttgtaaaaaaagattttctaaaaAGTATTTGCTGCATCACAAAAAAATCCATAAGAATACAACTAAAAGAAAAGAATGCCCTGtttgtaaaaaattagtaaCCACCAGTCTCAAAGTTCATATGGCAAAACATTCTGAAACCAAAGAATATAAATGTGAAATTTGCTCAACAGAATTTACATTTAAGCATTCATTAACAAAACATGTGCGATTGAAGCATAATGTTAGATCATATATATTTGTGATGGATATTAAACAAGAATTGGATTGCGTGGTTGAAACATTTGaCACTGCCACAATAAATACTGAGGAATCACTATctatTTCAAATGGATGCAAAGAAGAAGAAGTTGTTATTGaagatgaatttaaattattcaaagATAATGAATCTGATGAAGTAGAAGAGGTTAAGGTTACTCCGGATATAGCTCACTGTTCAAGTTCTGATGCCTCATCCAGTTCCATGTTACGATGTTATTCTTGTAGTGAAGAATTTGAAAATGCTTCTTCTCTTGAAAGTCACATCAAAGAGGTTCACATAAATGAATTAGCAATGTGctatggtaaaatatttacaaaaactgACCTACTTCCTGAGGAAGGTTGGGGTTATGTGGAAGATCCTGTTCCAAAGAAGAGGCGGAGTGTAAAAAGAGTATTACAATGTGATCAATGTGATTATAAGACAGAAAGAACTGGTTCTATGAAATCTCATATGGTCACACATTCAACAGAAAAACCTTTCCATTGTACACTATGTGATTATAAAGCATCAAGACCAGCTGTTCTCAAGAAACATATAATGATACACCATACAAAGGAAAAACCTTATCAGTGTGTAGTATGTGAATATAAAACTGCTTATCCtagttgtttaaaaagtcaCATGATGACTTATCATACTAATGAGAAACCATTTAAGTGTACTATGTGTGAATATAGATCAGTTGATTCTGGGGGTCTTAAAAGACACATAAAAGGTCGCCATTCTAATGAGAAAGCTTTCCAGTGTTCAATGTGTGATTACAGTACAGGAtactcaaaatgtttaaaaatacacattatgGCTCATCATACCAATGAAAAACCTCACCACTGTACTATTTGTGATTACAAATCTACTTATTCGCAAGATTTGAAAAGACATATGATTACAACTCATAATACTGAAAAACCTCATCATTGTACTTGGTGTGACTATAAAACTCCTATATTAAGTTACTTAAAAACACATATAAGGATTAATCACACAAATGACAAGCCTTATAGCTGTACTTTGTGTGATTATAAAACTGGAAGTAGTAACAATTTAAGGAACCATACTATCACACACCATTCAAATAGAAAGCCTTATCAGTGTTCTCAATGTGATTACAAAACTTCTCAATGCAGTAATCTGAAAGTACATATAAGAACTCAGCATACCAAAGAGAAACCTCACCATTGCTCACAATGTGAATTTAAAACTGCTTACTCACAGTTTCTAAAAATTCATGTTATGGCCGTACACTCAAAGGAAAAACCATACCATTGTACTGTCTGTGAATATAAAACAGCTATACCATCGCATTTAAAACGGCATGCAAACAGAATGCATCCAGATTAG
- Protein Sequence
- MLQFQDNDQDIPSTENSLFLSQSMLNTVCNDLNINESEGLCLQGNVPPEKELNFGPMPCSCSSLPTTFSDSNWNIGYQFGANQFTPSPYCLFEQQSKKQTECALPSALSDIEPFMGKEIDNKHNDYGIFSGKQGPSNTSSDCRLLSCIQSQQPLNISVYNSSFPTQDSSLLQFSTGNTNTYNLCLDSDCLDRICSPSRNQYSSCMLDQNLDFNTLRAENIGQVNDKLDLSNFMAMNNDEETILNVNESDEDSEIIVEDSDTESEVSIDVGPYIEDKEKDQPKKFVMKCFVCNLSYSEKFDFIQVNSSFPLTFISQTPVMLKLIEIIPTDLQTSVKFENNLICKRCLSLIDMVENLEVRLISSKKTICEYVCRSSKEVSDEDWSLLQGSNDICIDDSIGPLISKEVVQTGAVVENGNTVETFSSKDKNVDDDVIRKTVTGSIDIQPPHENSKDAINNKENTINIIEENNDKVLSEHPIISIYKDNLSSKVNSDSSIKLYPKIQPSVDFKYQCDRCGKFYRREKELAVHLKKHMGEFLEKCTECGKGFMKKSNLEIHLRKHRKHICLNCRASFVSDIELADHSKHCTGKKFTCSQCKLVFSSDLKLESHKEKHKVGTNNCSICNKSFKHPSYLVAHMISHSDKKPFTCEKCGRSYKNQSHLKRHLKTHSGLTCHICQQLFSFPAQLKSHLSMHAEEEECDICKKRFSKKYLLHHKKIHKNTTKRKECPVCKKLVTTSLKVHMAKHSETKEYKCEICSTEFTFKHSLTKHVRLKHNVRSYIFVMDIKQELDCVVETFDTATINTEESLSISNGCKEEEVVIEDEFKLFKDNESDEVEEVKVTPDIAHCSSSDASSSSMLRCYSCSEEFENASSLESHIKEVHINELAMCYGKIFTKTDLLPEEGWGYVEDPVPKKRRSVKRVLQCDQCDYKTERTGSMKSHMVTHSTEKPFHCTLCDYKASRPAVLKKHIMIHHTKEKPYQCVVCEYKTAYPSCLKSHMMTYHTNEKPFKCTMCEYRSVDSGGLKRHIKGRHSNEKAFQCSMCDYSTGYSKCLKIHIMAHHTNEKPHHCTICDYKSTYSQDLKRHMITTHNTEKPHHCTWCDYKTPILSYLKTHIRINHTNDKPYSCTLCDYKTGSSNNLRNHTITHHSNRKPYQCSQCDYKTSQCSNLKVHIRTQHTKEKPHHCSQCEFKTAYSQFLKIHVMAVHSKEKPYHCTVCEYKTAIPSHLKRHANRMHPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -