Hhal012160.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:678-11088[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0041 0.16 12.0 0.3 2 23 136 157 135 158 0.94 2 23 0.00097 0.039 13.9 2.9 1 23 163 186 163 186 0.97 3 23 0.12 4.7 7.4 2.0 1 23 192 215 192 215 0.89 4 23 0.0006 0.024 14.6 1.4 1 23 221 244 221 244 0.97 5 23 0.12 4.7 7.4 2.0 1 23 250 273 250 273 0.89 6 23 0.016 0.62 10.1 0.1 5 23 283 302 282 302 0.95 7 23 0.0021 0.085 12.9 4.4 1 23 308 331 308 331 0.97 8 23 0.0022 0.086 12.8 4.0 1 23 337 359 337 359 0.97 9 23 0.0043 0.17 11.9 3.0 1 23 365 388 365 388 0.95 10 23 0.00046 0.018 15.0 4.8 1 23 393 415 393 416 0.95 11 23 0.002 0.079 12.9 5.5 1 23 422 445 422 445 0.94 12 23 2.7e-05 0.0011 18.8 1.6 1 23 451 474 451 474 0.97 13 23 6.6e-05 0.0026 17.6 2.6 1 23 480 503 480 503 0.96 14 23 6.8e-05 0.0027 17.6 0.5 1 23 509 532 509 532 0.98 15 23 0.051 2.1 8.5 1.4 1 23 538 561 538 561 0.96 16 23 6.8e-05 0.0027 17.6 0.6 1 23 567 590 567 590 0.97 17 23 0.00024 0.0095 15.9 2.9 1 23 596 618 596 618 0.98 18 23 0.0057 0.23 11.5 6.7 1 23 625 647 625 648 0.95 19 23 0.00036 0.015 15.3 4.7 1 23 654 676 654 677 0.95 20 23 9.5e-05 0.0038 17.1 1.3 1 23 683 706 683 706 0.97 21 23 0.00017 0.0067 16.3 1.9 1 23 712 735 712 735 0.98 22 23 8.4e-06 0.00034 20.4 0.3 1 23 741 764 741 764 0.97 23 23 0.00014 0.0056 16.6 0.5 1 23 770 793 770 793 0.96
Sequence Information
- Coding Sequence
- ATGGATCAAATTGTTTCAAATAACCCAGGCATTCCtgttaaagaagaaattattgatgAGACTGAAACCTTTTGTTTAAGCAACTCTAGTATTTCAATTAAAGAAGAAACTACTGATGAGACCGAAACCTTTTGTATGAACAACTCTGGTATTTCAGTTAAAGAAGAAATTACTGATGCGACTGAAACCACCTTTCTTACCTTGGCTAGTATTAAAGAAGAGGAAACTCTAGAGATCTATTATgATATAAATAACTCTGGTGTTTcagttaaagaagaaataagtgATGAAATTGATCCCTCTGgaACCATAGATTCTCTTTCGCAGACAAAGAAGATGATACAGTATGGTTTGGAATCTGCAGTGAAGAATTGTGATTTGTCTATGATAGCTGAGAAACCTCTTGAATGTCCTTATTGTGAATATAAGGTTGTAGAAAGAAGTCTAATGATAAGACATATAATGAATCATCATACAAGTGTGGAGCACAGGTGTCCTCATTGTAAATATACAGCAACAGTATCTACtaatttaaaacttcatattattaccAATCATACAGATGAAAGTCCTTATCAGTGCCATCATTGTGGATataaagcagtaaaaaaaagcattattaaGCAACATATAATGGCGCTTCATACTGGTGATAGGCATCAtaagtgtcctcattgtgaatacgTGGCAACAGtgtctaataatttaaaacttcatattattaccAGTCATACAGGTGAAAATCCTTATCAGTGCCATCATTGTGGATataaagcagtaaaaaaaagcattattaaGCAACATATAATGGCACTTCATACTGGTGGTGGGCATCAAAAGTATTCTTATTGTGATTATATAGCAAAACAaagtggtaatttaaaaaatcatataatgtcCCTAcatactggtgagaagcctTTTAAGTGTCCTCATTGCAATCACAAAGCAGCACATAGTGGTACTTTGAAAACACATATAATGTCCCTTCATACTGATGTTAGACCTCATATGTgccctcattgtgattataaagcaGCACATAGAGGAACTTTGAAAACACATATAATGTCTCATACTGGTGAGAGGCCTTATAAGTGTCCTTGTTGTGATTATAAAGCAACACAAAgtagttctttaaaaaaacatattatgttCCTTCATACTGATAGACCTCATAtgtgtcctcattgtgattataaagcaGTACATAGTGGTAATTTGAAGGCACATATTATGTCCCATCACAACAGTGATGGACTTCATATGTGTCCTCATTGTGACTTTAAAACAACACAAAGTTGcaatttgaaaaatcatataatggccCTTCATACTGGTGAGAGACCTTATAAGTGTCCTCATTGTAATTATAAAGCAACACAAAGTGGTACTTTGAAAAGACACATCATTTCCCTTCATACTAGTGAGAAGCCACATAAGTGCCCTTATTGTGATTATAGAGGAACACGAAGTGGTCATTTGAAAAGTCATATTATATCTCTTCATACTGGTGATAGGCCTTATAAGTGTCCTTATTGCGACTACAAAGCAACACTAAATGGTACTTTGAAAAGACATATAATGTCCCTTCATATTGGTGATAGACCTCATATGTGTTCTTATTGTGACTTTAAAGCAACACTAATTAGTACTTTGAAAAGTCATATAATGTCCCTTCATACTAGTGAGAAGCCGTAtaagtgtcctcattgtgattataaagcaACAAAGAATGGTACTTTAAAAGCACACATAATATCTGTTCATACTGATGAAAGGCCGTATAAGTGTCCTCATTGTAATTATAAAGCAAAACAAAGTGGTACTTTGAAGACACATATAATGTTCCATAATAATAGTGATAGAGTTCATAAGTGTCCTCATTGTAATTATAAAGCAAAACAAAGTGGTACTTTGAAGACACATATAATGTTCCATCATAATAGTGATAGAGTTCATATGTGTCCTCATTGTGACTTTAAAGCAACACAAAGtggtaatttgaaaaatcatataatgtcCCATCATACTGGTGAGAGACCTTATAAGTGTcctcattgttattataaagcAACACGAAGTGGTGCTTTGAAAAGACATATCATTTCCCTTCATACTAGTGAGAAGCCGTATAAGTGCCCTCATTGTAACTATGAAGCAAAACTAAATAGTactttgaaaaaacatataatgtccCTTCATACTAATAAGAGGGCTTTTAAGTGTCCCAATTGTGATTATAAAGCAACTCAAAGTGGTAATTTGAAAAGACATATTATTTCCATTCATACATATAAGAAACCTCATAAGTGTCCTTATTGTGATTATGAAGGAACACGAAGTGGTCTTTTGAAAAGTCATATTATATCTCTTCATACTGATCTGAAGTCTTATAATGTAAGAGTCCCCATTGGGACTATGAAGCAACACAAAGTGGAGTTTTGA
- Protein Sequence
- MDQIVSNNPGIPVKEEIIDETETFCLSNSSISIKEETTDETETFCMNNSGISVKEEITDATETTFLTLASIKEEETLEIYYDINNSGVSVKEEISDEIDPSGTIDSLSQTKKMIQYGLESAVKNCDLSMIAEKPLECPYCEYKVVERSLMIRHIMNHHTSVEHRCPHCKYTATVSTNLKLHIITNHTDESPYQCHHCGYKAVKKSIIKQHIMALHTGDRHHKCPHCEYVATVSNNLKLHIITSHTGENPYQCHHCGYKAVKKSIIKQHIMALHTGGGHQKYSYCDYIAKQSGNLKNHIMSLHTGEKPFKCPHCNHKAAHSGTLKTHIMSLHTDVRPHMCPHCDYKAAHRGTLKTHIMSHTGERPYKCPCCDYKATQSSSLKKHIMFLHTDRPHMCPHCDYKAVHSGNLKAHIMSHHNSDGLHMCPHCDFKTTQSCNLKNHIMALHTGERPYKCPHCNYKATQSGTLKRHIISLHTSEKPHKCPYCDYRGTRSGHLKSHIISLHTGDRPYKCPYCDYKATLNGTLKRHIMSLHIGDRPHMCSYCDFKATLISTLKSHIMSLHTSEKPYKCPHCDYKATKNGTLKAHIISVHTDERPYKCPHCNYKAKQSGTLKTHIMFHNNSDRVHKCPHCNYKAKQSGTLKTHIMFHHNSDRVHMCPHCDFKATQSGNLKNHIMSHHTGERPYKCPHCYYKATRSGALKRHIISLHTSEKPYKCPHCNYEAKLNSTLKKHIMSLHTNKRAFKCPNCDYKATQSGNLKRHIISIHTYKKPHKCPYCDYEGTRSGLLKSHIISLHTDLKSYNVRVPIGTMKQHKVEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00764334;
- 90% Identity
- iTF_00764334;
- 80% Identity
- iTF_00764334;