Hhal000560.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:400548-418422[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 3.6e-05 0.0014 18.4 4.6 1 23 102 125 102 125 0.97 2 24 0.00027 0.011 15.7 2.1 1 23 136 159 136 159 0.95 3 24 2.6e-05 0.001 18.9 2.8 1 23 165 187 165 188 0.96 4 24 0.00049 0.019 14.9 4.3 1 23 194 216 194 217 0.95 5 24 9.6e-06 0.00038 20.2 2.3 1 23 223 245 223 246 0.96 6 24 0.4 16 5.7 4.4 1 23 252 274 252 275 0.95 7 24 0.00016 0.0064 16.4 1.3 1 23 281 303 281 304 0.95 8 24 0.024 0.96 9.5 3.5 1 23 310 332 310 333 0.96 9 24 0.0046 0.18 11.8 1.2 1 23 339 361 339 362 0.95 10 24 6.5e-05 0.0026 17.6 1.5 1 23 368 390 368 391 0.96 11 24 0.0003 0.012 15.5 2.4 1 23 397 419 397 420 0.95 12 24 0.0018 0.072 13.1 1.9 1 23 426 448 426 449 0.95 13 24 0.0011 0.045 13.7 1.9 1 23 455 478 455 478 0.95 14 24 0.26 10 6.3 3.8 1 23 484 506 484 507 0.95 15 24 9.4e-05 0.0037 17.1 2.3 1 23 513 535 513 536 0.96 16 24 0.0092 0.37 10.9 1.4 1 23 542 564 542 565 0.95 17 24 0.00019 0.0078 16.1 3.2 3 23 573 593 572 594 0.95 18 24 0.00016 0.0064 16.4 0.6 2 23 601 622 600 623 0.94 19 24 0.00016 0.0064 16.4 1.3 1 23 629 652 629 652 0.97 20 24 0.0028 0.11 12.5 0.6 1 23 658 680 658 681 0.95 21 24 0.015 0.6 10.2 3.5 1 23 687 709 687 710 0.96 22 24 0.00015 0.0058 16.5 4.0 2 23 717 738 716 739 0.95 23 24 0.0008 0.032 14.2 0.1 1 23 745 768 745 768 0.96 24 24 0.00051 0.02 14.8 3.7 1 23 774 797 774 797 0.95
Sequence Information
- Coding Sequence
- ATGGATTGTCCAGATGGATTATCCAACACACTAGGCATTTGTGTCAAGCAAGAAGTTATAGAAGACTCCGAAGAAGaatgTGATAGTACATCTCCCGAGAGCGATCCACTTCCAAGCGCTAATGACTTTGATCACGatagaataaaaatggaaataaagcaAGAATCTGATAACAGTGCTTTAACATCTAATCTTTCAGAAGAGTGCTTATTGCTAGAGGAACCAGAGGAGCCAAATGttgtagTTAAACCAGAGCACACCTTATTTGTCGAGAGTAATCTACTTTTGGATAAtggTAAAAAGTATTCATGCTTCCACTGTGGTAgaagatttaaaaacttttattcctttaaaGCTCACATAAAAGTATTACATTTACGTAAAAATTCTGGAAAAGTTGGTGTATTTAAATGCCCCCATTGCAAGTATATCTCTTCCTTCAAGGGTAATTTGAAGACTCATATATTGGGACAACATAAAAAGAAGAAACCTTataaatgtcctcattgtgattatagaGTTGTACATGCAGCAAATTTAAAGACACACATAATGGCACATCATACCAAACAAAAACCATTTCACTGTCcatattgtgattataaatgtGTTCAAACAGGGAATTTAAAAATCCATATAATGGCTCACCACATGCATGTAAAACCATATCAATGCCCTCATTGCGAGTATAGGACTGCTCAGTCAGGAAATCTAAAAACGCATATTATGGTACATCACACAAAAGAAAAACCGCATAAAtgccctcattgtgaatatagaGCCCGACAGATTGTACAAATTAAGACACATGTTATGTCACACCATACAAAGgaaaagcctcatcaatgtcctcattgtgaatatggTGCTGTCCAACCTGGCAATTTACGGACTCACATTATGATCCATCATACTAAAGAAAAACCTCACCAGtgccctcattgtgaatatagaGCTGTGCAACTAGTTCAGATCAAAACTCACATAATGACACATCACACTAATGAGAGGCCCTATCAGTGTTCACATTGTGAGTATAAAAGTGCTATAGCTGGCAATTTGAAAACTCATATCATTGCTCATCACTCCAAAGAGAAACCTTTTCGTTGTACTGATTGTGAATATAGTTCTGCCTACAGGGCAAACTTGAAAACTCATATTATGGTTCACCATACAAAAGAAAAGCCCCACAAATGCCCACATTGTGAATATTCTACTGTTTTACCTGGAAACTTAAAAACGCATATTATTGTTCATCATACAAATGAAAAGCCGCATGTCTGCCCATACTGTGAATATTGCGCTGCTCTGGCAGTGCAGTTAAAAAATCACATTCGAATCCATCACACCCTTGAAAAACCTCACCAATGTCCACATTGCCAATACACTGCAGCTCAtgctatcaatttaaaaacacatattatGGCACTTCATACCAAAGAAAAGCCACACAAATGTCCGCATTGTGAATACAGAGCTGTTCAAGTTGGCAATCTTAAATTTCACATAATGTCCCATCATACGAAAGAAAAGCCCTACAAATGTCCTCAGTGTGAATATAGTACTGCACACACCGGTAACTTAAAGACTCACATACTGGTTCATCATACAAAGGAAAAACCACACCAATGCCCCTACTGCGATTATAAAGCTGCCCAAATTGTACAAGTTAAAACACATATTATGTCACATCATACAATGGAGAAGCCAAATCATTGTCCCCATTGTGATTATAGATCTGTACAGCCTGGCAATTTAAAAACTCATATAATGGTACATCATACAAAAGAAAAGCCTTTACAGTGCTCTCAATGTGAATACAGAACAGTCCAACCTGGTAATTTACGAACACACATCATGGTTCATCACACAAAAGAGAAACCTCATCAATGTCcacattgtgaatataaagctGTTCAACCTGGCAATTTAAAAACTCACATTATGTCTCAGCATACTAAAGAGAAGCCTTTTCAATGTCCCTTTTGCGATTACAAAGCTGTTCAGTCTGCACAAGTGAAAACTCACATTATGGCTCATCATACTCATGAAAAGCCTCACCAATGCCCTCACTGTGAATACAGGGCTGTTCAGTTAGTCCAAGTCAAAACACATATAATGACCCATCACACTCACGAGAAACCCCAgaaatgtcctcattgtgattataaatgcGTTCAAGCTGGTAATTTGAAAACACACATCATGGCTCACCATACTAAAGAGAAGCCATTTCAATGCCCTTATTGTGAGTTCAGGGCCATACAGAGTGGGAATCTGAGGCTACACATCATGGCCCTTCATACGAAAGAGAAACCTCACCAATGTCCACATTGTGATTATCGAACTGTTCAGAGTGGtaatatgaaaaaacatattactaATTACCATAGTAAAAATGATGAGATTCCTAATTATGTATTGAGGAGTTTGGATCAGGATGTAGAAAAAGtcgaaacttaa
- Protein Sequence
- MDCPDGLSNTLGICVKQEVIEDSEEECDSTSPESDPLPSANDFDHDRIKMEIKQESDNSALTSNLSEECLLLEEPEEPNVVVKPEHTLFVESNLLLDNGKKYSCFHCGRRFKNFYSFKAHIKVLHLRKNSGKVGVFKCPHCKYISSFKGNLKTHILGQHKKKKPYKCPHCDYRVVHAANLKTHIMAHHTKQKPFHCPYCDYKCVQTGNLKIHIMAHHMHVKPYQCPHCEYRTAQSGNLKTHIMVHHTKEKPHKCPHCEYRARQIVQIKTHVMSHHTKEKPHQCPHCEYGAVQPGNLRTHIMIHHTKEKPHQCPHCEYRAVQLVQIKTHIMTHHTNERPYQCSHCEYKSAIAGNLKTHIIAHHSKEKPFRCTDCEYSSAYRANLKTHIMVHHTKEKPHKCPHCEYSTVLPGNLKTHIIVHHTNEKPHVCPYCEYCAALAVQLKNHIRIHHTLEKPHQCPHCQYTAAHAINLKTHIMALHTKEKPHKCPHCEYRAVQVGNLKFHIMSHHTKEKPYKCPQCEYSTAHTGNLKTHILVHHTKEKPHQCPYCDYKAAQIVQVKTHIMSHHTMEKPNHCPHCDYRSVQPGNLKTHIMVHHTKEKPLQCSQCEYRTVQPGNLRTHIMVHHTKEKPHQCPHCEYKAVQPGNLKTHIMSQHTKEKPFQCPFCDYKAVQSAQVKTHIMAHHTHEKPHQCPHCEYRAVQLVQVKTHIMTHHTHEKPQKCPHCDYKCVQAGNLKTHIMAHHTKEKPFQCPYCEFRAIQSGNLRLHIMALHTKEKPHQCPHCDYRTVQSGNMKKHITNYHSKNDEIPNYVLRSLDQDVEKVET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -