Basic Information

Gene Symbol
Trerf1
Assembly
GCA_000696795.2
Location
NW:65981-138077[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 7.6e-08 5.6e-05 22.7 0.1 3 46 915 958 913 958 0.94

Sequence Information

Coding Sequence
ATGCGGACTTTAAAACCACCGGATAAAAAgatatTTGAACCTGTGAATGAATTTAAGCCAGTTCTTTTGTATTCGGAAGATGAACAAGTCCAGATAAATATTGACGATAGCAGTTTGCTGAGGCATCAGTTATCTGACAgtgaaattgatattttcttgcCTGCATCAACGCcagtcGATAGTAGCTgtgaagttattaaaaatgaatcaagaCTTGCTCCCAGGAAACCTACAACAACCAAATCATCATCACCCAATAGGCAGGGACCTCAGCGATGCCAGGTATGTGGAAAAGTTTTTGCTAATGCTTCTGCTCTGGCGAAGCATAAGCTCACACACAGCGATGAGCGCCGGTATATTTGTACCATGTGTGCCAAAGCATTCAAACGACAAGATCATTTaaatgggCATATGCTGACACATAGGAATAAAAAACCATATGAATGCAAGGCTGAAGGGTGCAGCAAATCTTACTGTGATGCTCGGTCACTGAGGAGACACACAGAAAATCACCATGCTGGCACAGGTTCTACCAATTCAACGCCAGAACAATCCCCACCAACTTGTATACAATATGCACCTCCGCCAAATGAacaaaagCAAGTAAAAGGTCAAAATTCATCTGAGAAGCTTACAAAACAACATCTAGAGCTTATTCAACATgtcatacaaaaaaatcaacatcCATCACCAGTAAAATCTTTTGACACAACCAAAACCAACTCTGCTACCTCAGCAGTTATAGCTTCTACAAATGGTACCAAAACATGGACAATGCAGACCAGTCAATCCGCTGCAAAGGCTATGACATGCAGTATTAAACCAGTAGAGTGCAATTTATGTCATCGAAAATTCAAGAATATTCCGGCCCTTAATGGACATATGAGACTACACGGAGGATATTTCAAAAAGgaTTCAGATGCAAGGAGGTATGAAATAAAAGATGTAAATACAACACCATTACAAACCGCTAGCATTAGTGTCCGTGCTCTGATagaggagaaaattattttgaagagaATTTCTAAACCAAGTGGAATAATAAATGTCGAACAAGGGACGTTCACAGTGCAAAATGGGGATGAAATAGTGGCACAAAATGTTGGCTTGTTACAAAAATCAGTAACTGTTGACAATCCAATCATCAAGAGAGCTCCTAAAATCACTCTTAGAAGATCTGCCCCTGATCCTGGAATGCATAAGACAATGGATGGcaCAACTACTTTGGTTGATCCAGAAAATggaattatttcattacaaGAATTGACAGATGATACTGTTGACACATCTTCCtttcaaaaaacaataagtGAATCTGTTATTTTAGAAACAGTGGATTCCAGTAGTATGGGAGAAGTACCAACTaaaatagaagACATTGATGACATTACAGCCCTAGATGACTGTCAAAGTGCTGGAGAATGTTTACCGAGCCCTCAGTCATTTCAACATAATCAGGAATTACAGAGTGTTTTGGATTCTCCACTACCTGCCAGTTTAGCAGACTTTGCCTACAGCCATTCCCAAGATACAAATAATGAACTGCAAAATGATCCACAAAATTATTCACCCCCTATGGTAGCTTCTTCCAGCTtttcctattcctcacctaagTTGTCTTCTTCCCACAGTTCTTTGTTACAAAATTCCAATCCTTCAGATTTTTTCTCTCCTAATGGAATATCAAGTACATCTGTATCCAGTGATGCAGTAGTCCTAACTTCTAAATCTCCTTCTCCTTCCACTAGCACATCAAATGCATCCTTTCAATCACAGATGATGCCAAATTCAGATGATCCTTTACTTTCAAGCAGCCCCAAAGAATTTGTCTCTAGAAAACGAGTAGAATTCCATCCTCTTAAAATTCTACAGAAAAATACATCACAGGGTGCAACATCACAGAATGTGACTGGAATACTTCTGGGGAGTAATGGTGAATTGAGAGTAATACATACATCTCCTAAGCATGGTTCAAAACTTGCCTCAGCTGCATCTTCATATCCTTGTTTGAAATCAGAAAATGgcataaaaatcaaaagtataTCCTTCCAGCCCAAAActacatttataaagaaatatgagaaaattggACAATTCATTTCTGATGAATCCAAAGATAAAGCTGATGATGCTGTATTTAATACTCCAAGTTTAGCATTGAGCCCTCTTCATCTTTATCGAAAACGACCCCGTCTTGAATTCAACCAGTATGTATCACAATATAAATCaagattaagaaattttaagagTGTTCAAGGAAACAAACCTTTGTCATATACTCCACCACCAATGCTCCCACCATCAAGACCTGGGCAGGGTTTATATTGGCTAGCTGTTACATCTACACCCAGTTCAACTACCCTTAATAAAGggTCATCTTGGGATGAAGGACCGGAAGCTCCAGAAAGTGATTCTAGACCACATATTAACATTGGTTCGGAATACCAAGCTGAAATACAAGATtgtgtaaatgaaaaaagaaacttGAAGGAAAAAGCTAGAGATCATTTACTTTGGGATTCTAgtctaaataaaattgtttcagatTATGAAATAGAAAAGTACTTGGAGTTTGCATGCTGTGCTGCAGTGCCAGGTGGAGGAAGGAATAAGGAACATGCTCTTCATTTATTGCATATATGCAATGGAATAATACAAgaTGCAATACTAAAATTGATGCAGCCAGTTTCATGGCTCCCAGCAGATCATCCTCTTTTAACTTTTGAATATACAGATTCTGAGAAATGGAATATGATAGAAATAGATGCATTTCATCAAGCATTATTAAAGTATGATAAGGATTTCTCATCTGTTGCACATGAGGTTGAAACGAAAACCTCAAAGCAATgtgtacaattttattatttatggaaaaaagtATGTCCAGAGGAGTATAAAAAACTTCGAGTTTTTAGGAAGCGGTTCCGTGaaacagaatatgaaaatgaatctCCTAAGTTAGACCAACAGACTGGAGATGCTGAGCTAGTTTCTACGACATCCTCAGAAGGCCGTTTATTCCTCTGTGAATATCAAGACTGTTCTGCAagcTTCAATTCTCGAGCAGCCTTAAACGGTCACATAAGAATTCATGTGGGTGGTACAGGAACAAGATGTGGTACACCTGACAAACGATCACCGCAATTAGTTGAATCTCTTGAAGAGTTTCCTTGCAAAATCTGTGGAAAggttttcaataaagtaaaaagcAGAAGTGCTCACATGAAATCGCACCGGCCTCCAGATGCAGAAGTAAAGAAGCAAAAATCAGATTTGAACAAAGACACTGGTATCTTATCACTAACACGGACTGGTAGTGTTTCCTCTTCAATGTCAACACAAcgtaattcataa
Protein Sequence
MRTLKPPDKKIFEPVNEFKPVLLYSEDEQVQINIDDSSLLRHQLSDSEIDIFLPASTPVDSSCEVIKNESRLAPRKPTTTKSSSPNRQGPQRCQVCGKVFANASALAKHKLTHSDERRYICTMCAKAFKRQDHLNGHMLTHRNKKPYECKAEGCSKSYCDARSLRRHTENHHAGTGSTNSTPEQSPPTCIQYAPPPNEQKQVKGQNSSEKLTKQHLELIQHVIQKNQHPSPVKSFDTTKTNSATSAVIASTNGTKTWTMQTSQSAAKAMTCSIKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDSDARRYEIKDVNTTPLQTASISVRALIEEKIILKRISKPSGIINVEQGTFTVQNGDEIVAQNVGLLQKSVTVDNPIIKRAPKITLRRSAPDPGMHKTMDGTTTLVDPENGIISLQELTDDTVDTSSFQKTISESVILETVDSSSMGEVPTKIEDIDDITALDDCQSAGECLPSPQSFQHNQELQSVLDSPLPASLADFAYSHSQDTNNELQNDPQNYSPPMVASSSFSYSSPKLSSSHSSLLQNSNPSDFFSPNGISSTSVSSDAVVLTSKSPSPSTSTSNASFQSQMMPNSDDPLLSSSPKEFVSRKRVEFHPLKILQKNTSQGATSQNVTGILLGSNGELRVIHTSPKHGSKLASAASSYPCLKSENGIKIKSISFQPKTTFIKKYEKIGQFISDESKDKADDAVFNTPSLALSPLHLYRKRPRLEFNQYVSQYKSRLRNFKSVQGNKPLSYTPPPMLPPSRPGQGLYWLAVTSTPSSTTLNKGSSWDEGPEAPESDSRPHINIGSEYQAEIQDCVNEKRNLKEKARDHLLWDSSLNKIVSDYEIEKYLEFACCAAVPGGGRNKEHALHLLHICNGIIQDAILKLMQPVSWLPADHPLLTFEYTDSEKWNMIEIDAFHQALLKYDKDFSSVAHEVETKTSKQCVQFYYLWKKVCPEEYKKLRVFRKRFRETEYENESPKLDQQTGDAELVSTTSSEGRLFLCEYQDCSASFNSRAALNGHIRIHVGGTGTRCGTPDKRSPQLVESLEEFPCKICGKVFNKVKSRSAHMKSHRPPDAEVKKQKSDLNKDTGILSLTRTGSVSSSMSTQRNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00764159;
90% Identity
iTF_00764159;
80% Identity
iTF_00764159;