Hrub014279.1
Basic Information
- Insect
- Halictus rubicundus
- Gene Symbol
- nfxl1
- Assembly
- GCA_028454235.1
- Location
- CM052180.1:3505067-3507962[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.1 9.2e+03 -3.2 1.1 15 19 126 130 125 130 0.81 2 19 0.34 2.9e+03 -1.7 0.2 4 10 161 167 161 167 0.93 3 19 5.6e-08 0.00048 20.0 15.1 1 18 175 191 175 192 0.98 4 19 1.6e-07 0.0014 18.6 13.1 1 19 229 246 229 246 0.94 5 19 0.1 9e+02 -0.0 0.6 5 10 270 275 269 275 0.96 6 19 2e-05 0.17 11.9 9.6 1 18 281 299 281 300 0.92 7 19 6.5e-05 0.56 10.2 8.6 1 18 336 353 336 354 0.97 8 19 0.0021 18 5.4 7.0 1 12 388 399 388 399 0.94 9 19 0.81 7e+03 -2.9 0.8 6 10 409 413 408 413 0.91 10 19 2.1e-06 0.018 15.0 15.0 1 18 419 436 419 437 0.91 11 19 0.0001 0.9 9.6 9.8 9 19 485 495 483 495 0.90 12 19 0.0025 22 5.2 6.2 1 12 505 515 505 515 0.95 13 19 0.85 7.4e+03 -2.9 5.8 14 18 547 551 547 552 0.89 14 19 0.00037 3.2 7.8 8.3 1 12 588 599 578 599 0.91 15 19 0.61 5.3e+03 -2.5 1.0 6 10 615 619 614 619 0.88 16 19 0.0022 19 5.3 16.0 3 19 628 644 627 644 0.92 17 19 2 1.7e+04 -6.5 3.4 9 13 650 654 650 654 0.71 18 19 0.0004 3.5 7.7 9.3 1 16 689 703 689 709 0.88 19 19 0.72 6.3e+03 -2.7 0.4 5 10 738 743 738 743 0.92
Sequence Information
- Coding Sequence
- ATGCAGAAGTTCAGACGTGCCCAAGCACAAAATAAGATAGCAATTAACAAGCATTTAGAGGCAAATGCTTATTTAGAATCGTCGAGCGAGGACGAAGACGATATAAATACAGAAGACATACAAAATGTAGTTGGCAAAGTGTTGTCTGCCTATCAAGGAGGAGAGGTAGACACGGAAAAGACTTTATCTTACTTAGTTAATCTATTTCAATCTGGCAGCGCAGTGTGTTTAATATGCATCTCAACTGTAAAGAAAGCAGATGCGATCTGGAACTGCAGCAAGTGTTTCGCTTTTTTACATTTGTCCTGCATTCTGCATTGGATACGAGATAGCCTAAACGTAAAGCGTGAGAAAGGTGTTGCTCCCATTTGGGCATGCCCAAAATGTCGTATGGACTATGGACAAGACGAAGTTCCTCGTAATTATAAATGCTTCTGTAAGAAAGTTATAGACCCTGCGTTCCAACCGTGGAATATACCGCATTCCTGCGGAGATATATGCGGCAAACTCTTGCAACCAGAGTGTGGTCATAAATGTGTTCTACTTTGCCACCCTGGGCCGTGCCCACCGTGCGCGAAAACAGTATCGATTAAATGCTTTTGTGGTAAACAGGCTCCTGAACAAAGAAGATGCAATGCCAAAGACTGGAGTTGTGGCACGGCGTGTAACAAAAAGTACAAATCATGTTCGCACAGCTGCGTGCAACTATGCCACACAGGAGATTGCCCTCCTTGCTCGGAGTCGTTGCTACTCGAATGTCGCTGTAAAAGCAGCACAGAAATAAGACAATGTTCCGAAGGTGCGTGGACTTGCGAGAAACCTTGTCGCCGGCCTTTGTCCTGCAACGTTCATGTTTGCCAGAGCACGTGCCATTTGCTCGGAGACTGTGGTCCATGCGCTTTGGAAAAGAATAGAACATGTCCCTGTGGCAAGAAGCGTTACGCGGTTTCTTGCAGCCAGGAACAGTTGCCCACGTGCGGAGACACGTGCGGCAAGCTGCTGGATTGTGGTTCACATTATTGCAACATGAGATGTCACATGGATCAATGCGGACAATGCTTGGAAGTAGTAACAAAGTCCTGTCGATGCGGTAGCTATACGAAAGAAGTCGCCTGCGGCAAAGAGTTCCACTGCAACAAGAAATGTATGCAGATGCGCCTCTGCGGCAGGCACATGTGCAACAGAAAATGTTGCGATTGCTTGATCAAGAACACGTTCAACGCGTGCGAGAAAATTTGCGAGAACACTTTAAATTGTCGCAAGCACAAATGCTCGGGCCCGTGTCACAGTGGTCCGTGTTATCCTTGCGAACGTACGGATATTATCCAATGCAGATGCGGATACAACAAAATAACAGTACCGTGCGGTACTACGAAGAGAGTAAAGCCTCCGCCGTGTAACAAATCGTGCAAGGTGCCGCCGATCTGCCATCACCCTAAAAGGGAAACGCATAAATGCCATCAGGGTCCGTGTCCACCCTGCAAAAAGATTTGCGATTTAGTGTACAAACGATGCGGACATTCTTGCGTTGCCGTTTGCCACACGAAAGTCTGGGTGAAAGTGAACAAAAGTGACGTGAAAGCGAATCCTGCGGGACCGTGGGAGATACAGAAAGAAACGAAGCAGCTAAAAACGTTACCGTGTCCGCCGTGCGAGGTCTCGGTACAGGTCACATGTTTGGGAGGACACGAAACACGTCCGTGGCCTTGTCACATAGCACGGCCTACGTCTTGCGGAAGACTTTGCGGGAAAATGTTGCCCTGCACCAATCATACTTGTGAGCTAGTTTGCCACAAGGTATTATCCGCAGAGGATACCAAAAATGCTACTCCGTGTATGGATTGCGAGAAACCGTGCGAGTTCCCGCGTCCACAAGGTTGCACGCATTCCTGCCCAAAGTCGTGCCACCCAGCACCCTGTAACCCTTGCAAGCAGCTAGTTAAAATTCCGTGTCATTGCGGTATAGTCACTTTGTACAGAAGATGCGCCGAGTTGACATCGGCCACCGCAGAACAACGCAACGACCTTCTCAAATGTGGAAATCAGTGCCCTAAAAATTATCCATGCGGTCACCGATGTATGTATGATTGCCATCCCGGCGTATGCAAAAACGAGAATGAATGCAATAAGAAGGTGAAGTTATTCTGTCCGTGTAAACGTATCAAGAAGGATTTTGCATGCTCGCTGATACAAAAGGAACAAATTCGATTAAAATGTGATGATGTTTGTAAGAAGTTGAAGATGGAGAAGAGTCTAGCGGAAGCAGCTTTGCTAGAACAAAAACGGCAGGCAGAAGAAATACGTAATCAAGAGGAGATCGAGAAATTCGAGAGGAAATTCAAACCGCGTCGCAAAGGAAGGGACAAGTTCGATAAGAAACAATCTCGGATAGAAACGAATAGTCACTATTGGAAATATTGGATTTTAGCGATTTTATTGTGTACAGTAGGTATAGTGATATATTACGTGAACGTTCAAAGAACGTGA
- Protein Sequence
- MQKFRRAQAQNKIAINKHLEANAYLESSSEDEDDINTEDIQNVVGKVLSAYQGGEVDTEKTLSYLVNLFQSGSAVCLICISTVKKADAIWNCSKCFAFLHLSCILHWIRDSLNVKREKGVAPIWACPKCRMDYGQDEVPRNYKCFCKKVIDPAFQPWNIPHSCGDICGKLLQPECGHKCVLLCHPGPCPPCAKTVSIKCFCGKQAPEQRRCNAKDWSCGTACNKKYKSCSHSCVQLCHTGDCPPCSESLLLECRCKSSTEIRQCSEGAWTCEKPCRRPLSCNVHVCQSTCHLLGDCGPCALEKNRTCPCGKKRYAVSCSQEQLPTCGDTCGKLLDCGSHYCNMRCHMDQCGQCLEVVTKSCRCGSYTKEVACGKEFHCNKKCMQMRLCGRHMCNRKCCDCLIKNTFNACEKICENTLNCRKHKCSGPCHSGPCYPCERTDIIQCRCGYNKITVPCGTTKRVKPPPCNKSCKVPPICHHPKRETHKCHQGPCPPCKKICDLVYKRCGHSCVAVCHTKVWVKVNKSDVKANPAGPWEIQKETKQLKTLPCPPCEVSVQVTCLGGHETRPWPCHIARPTSCGRLCGKMLPCTNHTCELVCHKVLSAEDTKNATPCMDCEKPCEFPRPQGCTHSCPKSCHPAPCNPCKQLVKIPCHCGIVTLYRRCAELTSATAEQRNDLLKCGNQCPKNYPCGHRCMYDCHPGVCKNENECNKKVKLFCPCKRIKKDFACSLIQKEQIRLKCDDVCKKLKMEKSLAEAALLEQKRQAEEIRNQEEIEKFERKFKPRRKGRDKFDKKQSRIETNSHYWKYWILAILLCTVGIVIYYVNVQRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00865697;
- 90% Identity
- iTF_00183647;
- 80% Identity
- -