Hrub006929.1
Basic Information
- Insect
- Halictus rubicundus
- Gene Symbol
- GATA-B
- Assembly
- GCA_028454235.1
- Location
- CM052175.1:138571-141759[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.35 8.5e+02 -0.4 0.1 22 31 34 44 29 47 0.77 2 3 1.4e-17 3.4e-14 52.1 3.5 1 34 73 105 73 107 0.97 3 3 1.6e-17 4e-14 51.9 3.3 1 34 127 159 127 161 0.98
Sequence Information
- Coding Sequence
- ATGCGCGTAAACGTTTGTCGGAAAACGAGTAGTTTGAGAGCAACGAACGATTATCGGAAAACTACCGAAAACGAAACTATCGACAGGCTTTCCAAGCTACTCTGTCTCATAGCCTGCGGGGAATACCTCCGCGACGCGATAACAGTTCTGCTGGAGTATACGAAACCGTGCACAGTGCACAACATCGGGACGGAATACTTTACGGATGGCCGCGAGTGCGTGAATTGCGGCGCAGTTTCTACTCCACTGTGGCGACGGGACGGTACCGGCCATTACCTCTGCAACGCATGCGGTCTCTACAACAAGATGAACGGCATGAATCGGCCCTTGGTCAAGCAGCCGCGTCGATTGTCCGCTTCGAGACGCGTTGGCACTGTCTGCAGCAACTGCCAATCAACGGTAACGTCACTTTGGCGACGCAATACCATGGGTGAACCGGTTTGTAACGCTTGCGGTCTATATTACAAGTTGCATGGCATAACTAGACCTCCTAACATGAAGAAGGATACCATTCAGACGCGAAAGAGAAAGCCAAAGGGCGGCATGAAGTCCACGGATACACCCCTTTCAGTTTCCGCCCCTCCCTGCACAaacaacaacaatagcaataacaacaacaacaacaataccaacaacaacaacaatagtttaaaaatggaaccggATACGTACGGTGACTTGCGGATGGGCCATGCCGGAGTACCTCAAGTTTGTTACAGCGGCTCGCTTTACGGTAGCCCCCAACCATCCGGTCGCATCGTGACGTACCagccggctactcctggaatgtactacgacataatagcgtctcagcagcagccgcaacagcaacaccagcaacaccagcagcaacaccaacaacaacagcatcaacatgcgcaacttctcgagacgcattcgccgAAAGTCGAGTGTCCGTCGCCTTGCGCGAACCGATCGCCGGATCATCACCAACTCGCTACTCCTCATATCGTTACTCTCGAAAATTCCTCGCCCACCGCAGCAGCCGCCAAAATGATCATGGACAACGGTCACCTGGACAGACCGACGGTAGTTTCTATATCCTCCTAA
- Protein Sequence
- MRVNVCRKTSSLRATNDYRKTTENETIDRLSKLLCLIACGEYLRDAITVLLEYTKPCTVHNIGTEYFTDGRECVNCGAVSTPLWRRDGTGHYLCNACGLYNKMNGMNRPLVKQPRRLSASRRVGTVCSNCQSTVTSLWRRNTMGEPVCNACGLYYKLHGITRPPNMKKDTIQTRKRKPKGGMKSTDTPLSVSAPPCTNNNNSNNNNNNNTNNNNNSLKMEPDTYGDLRMGHAGVPQVCYSGSLYGSPQPSGRIVTYQPATPGMYYDIIASQQQPQQQHQQHQQQHQQQQHQHAQLLETHSPKVECPSPCANRSPDHHQLATPHIVTLENSSPTAAAAKMIMDNGHLDRPTVVSISS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -