Basic Information

Insect: Halictus rubicundus
Gene Symbol: -
Assembly: GCA_028454235.1
Location: CM052178.1:15888427-15890640[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.4 1.2e+02 3.4 3.1 1 22 10 31 10 33 0.89

2 15 0.35 29 5.4 0.1 2 19 56 73 55 76 0.90

3 15 0.15 12 6.5 4.0 1 23 83 106 83 106 0.91

4 15 0.053 4.4 7.9 4.0 1 23 117 140 117 140 0.88

5 15 0.22 18 6.0 0.0 1 20 173 192 173 194 0.94

6 15 3.5 2.8e+02 2.2 1.4 1 23 201 224 201 224 0.87

7 15 9 7.4e+02 0.9 5.5 1 19 233 251 233 256 0.87

8 15 0.064 5.2 7.7 0.3 1 19 286 304 286 306 0.93

9 15 0.0035 0.29 11.6 2.2 1 23 314 336 314 336 0.97

10 15 0.0057 0.47 11.0 2.0 1 23 346 369 346 369 0.93

11 15 0.022 1.8 9.1 0.1 2 20 409 427 408 429 0.93

12 15 0.0014 0.11 12.9 3.5 1 23 436 458 436 458 0.97

13 15 8.5 6.9e+02 1.0 0.1 1 10 467 476 467 490 0.67

14 15 0.79 64 4.3 0.4 1 23 585 608 585 608 0.90

15 15 0.00012 0.0099 16.3 0.2 2 23 629 651 628 651 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.4	1.2e+02	3.4	3.1	1	22	10	31	10	33	0.89
2	15	0.35	29	5.4	0.1	2	19	56	73	55	76	0.90
3	15	0.15	12	6.5	4.0	1	23	83	106	83	106	0.91
4	15	0.053	4.4	7.9	4.0	1	23	117	140	117	140	0.88
5	15	0.22	18	6.0	0.0	1	20	173	192	173	194	0.94
6	15	3.5	2.8e+02	2.2	1.4	1	23	201	224	201	224	0.87
7	15	9	7.4e+02	0.9	5.5	1	19	233	251	233	256	0.87
8	15	0.064	5.2	7.7	0.3	1	19	286	304	286	306	0.93
9	15	0.0035	0.29	11.6	2.2	1	23	314	336	314	336	0.97
10	15	0.0057	0.47	11.0	2.0	1	23	346	369	346	369	0.93
11	15	0.022	1.8	9.1	0.1	2	20	409	427	408	429	0.93
12	15	0.0014	0.11	12.9	3.5	1	23	436	458	436	458	0.97
13	15	8.5	6.9e+02	1.0	0.1	1	10	467	476	467	490	0.67
14	15	0.79	64	4.3	0.4	1	23	585	608	585	608	0.90
15	15	0.00012	0.0099	16.3	0.2	2	23	629	651	628	651	0.93

Sequence Information

Coding Sequence: ATGCTCGACACTTTAAAGAACTACAAGTATTTCTGTACGTTCTGCACACAAGGCTTCCTAAAGAAGGTTAATCTTCAAATCCATACGGGACACTTCCATGGTGGTCAAACGCCCATCATTCCCAAACCGTGGTTGGATACTACTTCCAATTGGGAGGTGAACACTGTGTGCAACGTGTGTAATCTGATATTCGAATCCAGCGAACGGTTCATCGAGCACAATATGTATTACTACAAGGGACAGATGTTTACCTGCACTTTCTGTAACCAGACCTTCCAGGGAATGTACATGCTGAACCATCACAACAAGTTCGTGCACTACACGGAGGACATGACGAAACAGTACACGTATACGTGCAACATCTGCAACGAGGGCTTTACCCAAGAGTCCCAGCACCACGCGCATAAATTACACGTTCATTCGAAAGTGCCTGAAGTCAACACGCGGTCCCTGCAAGATCATACCTACGCCATCAAGGTTGGGAACGGAGGATCGAGGAACGGGCCGACAACGAGATACAACTGTGAGGTTTGTTACATGAACTTTATGGTCGAGGAGGACCTACGGCAGCACGAGTTGGAGTACTCCAACAATGGCGACTACCTATGCAGCTACTGCGCCAGAAGATGCCCTACGGACAGCATTCTCAATAAGCACGAGAGTTTGTCGCACACCTGTCGCAACTTCACCGACTGCTACAAGTGTCGCTACTGCGAGGAGGTGCTTTCCACATGTACAGCGTTGAAATGCCACGAAGTACACTTCCACCAGAAGATCTCTAACCCTCCGATCAACAGCGATAATCAGCCAATCGTGGATCAGAGTATAATACCACTAGGAAACGTTGGGACCCCATTCGCCTGCTCGATTTGTGGCATGAAGTTCCTAACCTTAGAGAAATTGAACCATCATAACTTAGAATACTCGAACGTCGGTCTGTACAATTGCCACATCTGCAGTCGGAGGTTCCCGGAGTTATATCGCCTGGAAGTCCACAAGCTGAAGCACTCGAACTTGAATTACATACTGTCTAAGCATCACTGCCCCATATGTCGCGAGGGATTCGCAAATCCAGTCAATGTCCGGACGCACGTGTTGCACTTCCACCAGAACGAAGTCTCCGAGCCCTGGACAACGAAGGACACGCAGACCTCACAGGCAGTCAACCACAATGTCGCGATATCCAACGTGGCCTCAAACAGCCTGTCGACGATGAATTCGACCAAGTGTCGCGAATGTCTGGTGTCGTACGATTCCGAGAGTGCTTTAAAAAGGCACCTAGCACGCTTCGCAAACAAAGGACAACACGTCTGCGAGCACTGCGGCAGGAGGTTCCCGTTGTTGAAGCTGTTGAAGGAACACTCGAAGAGGCATGTCACCGGCGTTCAGCACATGAAGTATGCGTGTCCCGAATGCGACGATAGACTTGGTACTCCAGTGGCCAGATATCAGCATATCGTTCATCTTCACGGGAAGAGTAAGTGGATAGGCGACCTACCTCTTTCCATAAAGATTCGGTACAATGCTGAAATTTTAAACAATGGGGATTCCGATCTATTATTTCTTAGATCAGATACTCCACCAGATCAGCTGATTTACGCTGGTGAACCTATTGCTGCAGCCAGTCTTATGAACGCATTAAGCGATGGTCAGGAAAAATCCTCATCAATAATTGATCAGCAGGCGGATACGACTGTAGCGGTAGCTCAGCAAGAGACACCGCTTCAAAATTTAGAAGTGGAGACTCCGTACTACACTTGCCCCCTGTGCAACTTCAAGATCCAAATGCTGGAGACATTTGTGTCGCATTTGAAACTGGAGCACGGGATGATGATCCAGGGGACCATATCCGACATTCCTCAGTCTTTGACAGGACGCGTCATCAGCTGCTTGACCTGCGGGGTCACCTTCACTACGGAAGACGATCTTAAGATACATTTGAAGGACACGCATGTGAGGATTTGCCCAGTCAATACGGAAGACGCCGCCGGTTCTGTGGAGAATGACAAAGACGTCGTACGAACCGTTTGGGAGAAGAAGCCGGACGCTTCCCAACAGTTAGGGGACCAGGGCGACTCGGAGGTTCATGTTATGTGCTGGAGTTACCGCGCCCCGATCATGAACTGCGACAAAACTGTCGCGAAGCCGGCACCAGCGAATTCGAGTGCTGTTGGTACCACTCTGAGGATTAAAGACTTTGCCAAATTGGTTTAA
Protein Sequence: MLDTLKNYKYFCTFCTQGFLKKVNLQIHTGHFHGGQTPIIPKPWLDTTSNWEVNTVCNVCNLIFESSERFIEHNMYYYKGQMFTCTFCNQTFQGMYMLNHHNKFVHYTEDMTKQYTYTCNICNEGFTQESQHHAHKLHVHSKVPEVNTRSLQDHTYAIKVGNGGSRNGPTTRYNCEVCYMNFMVEEDLRQHELEYSNNGDYLCSYCARRCPTDSILNKHESLSHTCRNFTDCYKCRYCEEVLSTCTALKCHEVHFHQKISNPPINSDNQPIVDQSIIPLGNVGTPFACSICGMKFLTLEKLNHHNLEYSNVGLYNCHICSRRFPELYRLEVHKLKHSNLNYILSKHHCPICREGFANPVNVRTHVLHFHQNEVSEPWTTKDTQTSQAVNHNVAISNVASNSLSTMNSTKCRECLVSYDSESALKRHLARFANKGQHVCEHCGRRFPLLKLLKEHSKRHVTGVQHMKYACPECDDRLGTPVARYQHIVHLHGKSKWIGDLPLSIKIRYNAEILNNGDSDLLFLRSDTPPDQLIYAGEPIAAASLMNALSDGQEKSSSIIDQQADTTVAVAQQETPLQNLEVETPYYTCPLCNFKIQMLETFVSHLKLEHGMMIQGTISDIPQSLTGRVISCLTCGVTFTTEDDLKIHLKDTHVRICPVNTEDAAGSVENDKDVVRTVWEKKPDASQQLGDQGDSEVHVMCWSYRAPIMNCDKTVAKPAPANSSAVGTTLRIKDFAKLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -