Basic Information

Insect: Halictus rubicundus
Gene Symbol: -
Assembly: GCA_028454235.1
Location: JAQQRQ010001067.1:280-3669[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.054 4.4 7.9 0.1 2 20 101 119 100 120 0.94

2 13 0.0091 0.74 10.3 4.6 2 23 248 270 248 270 0.91

3 13 0.00045 0.036 14.5 1.8 3 23 315 336 314 336 0.96

4 13 5.1 4.2e+02 1.7 7.6 3 23 424 445 423 445 0.95

5 13 0.058 4.8 7.8 2.3 1 23 494 517 494 517 0.94

6 13 0.031 2.5 8.7 3.7 2 23 565 587 564 587 0.94

7 13 9.7e-05 0.0079 16.6 0.1 3 23 612 633 611 633 0.93

8 13 0.0067 0.54 10.8 3.6 2 23 673 695 672 695 0.96

9 13 0.09 7.4 7.2 4.2 3 23 710 731 708 731 0.92

10 13 8.6e-05 0.007 16.7 0.1 2 23 775 797 775 797 0.94

11 13 0.042 3.4 8.3 1.6 1 23 875 897 875 897 0.98

12 13 0.015 1.2 9.7 0.6 2 23 912 934 911 934 0.93

13 13 0.0059 0.48 10.9 0.8 1 23 1010 1033 1010 1033 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.054	4.4	7.9	0.1	2	20	101	119	100	120	0.94
2	13	0.0091	0.74	10.3	4.6	2	23	248	270	248	270	0.91
3	13	0.00045	0.036	14.5	1.8	3	23	315	336	314	336	0.96
4	13	5.1	4.2e+02	1.7	7.6	3	23	424	445	423	445	0.95
5	13	0.058	4.8	7.8	2.3	1	23	494	517	494	517	0.94
6	13	0.031	2.5	8.7	3.7	2	23	565	587	564	587	0.94
7	13	9.7e-05	0.0079	16.6	0.1	3	23	612	633	611	633	0.93
8	13	0.0067	0.54	10.8	3.6	2	23	673	695	672	695	0.96
9	13	0.09	7.4	7.2	4.2	3	23	710	731	708	731	0.92
10	13	8.6e-05	0.007	16.7	0.1	2	23	775	797	775	797	0.94
11	13	0.042	3.4	8.3	1.6	1	23	875	897	875	897	0.98
12	13	0.015	1.2	9.7	0.6	2	23	912	934	911	934	0.93
13	13	0.0059	0.48	10.9	0.8	1	23	1010	1033	1010	1033	0.98

Sequence Information

Coding Sequence: ATGGCGCACGAATCGACGATGTCGGACCTGACGGAGTTGGACAGCGACGGGTCGAGCTGCGGGGAGCGGGGCGACGCGAGGAAACGTCTCCGCGTCGACGTCGACTCGACGGGGCCGAAGAAGAGGCGGAAACAAACGACGCCCGTAAGATTCTCGTCGACGCTGACGAGCGGCGTGCACGAGGAGTCGAACGAGGACGAAGAGGAGGACGAGGGCAGCGAAGGTAAGCTGTCGACGCAGTCACCCATACCGAGCCAGTCGTCGACGCGCGGCGACGACAACAACCCGGGTAACGAGCTCCGCTGCCAGTATTGTAGTCAGTTTTTCGAGGGCAAGGCCGCGTTGAACTTGCACCTCGATTGCGAGCACGGCTCCTCCGCGCCTCCGAATCGAATCGGCTCGCCGATCGGCGCGATCAAAGCGGAACCGTCGCCGCATCAACAACCGGACCAATCCGAGAACCCCGTGAACCTGCTCAGCGTGAAGAGCTTCGCGACCAATTGGCTAGGCGCGTCCGGGCAGCACGTGCAATCGCAGATGCAGACGACGCCTAACGAGGAACTATGGCCGGCTCCCGTGAACCAGCTCGCCGCGTTGCCGAGCCATTTGCAAAGCCTGCCGGGATTTCCCGGCGCGTTGGCGCAGTATCTACCCTTGCCCGCGTTCCCGCTAACCGATTCCAGCCACATCGTCCGGCCGCCGATGGGACAGACCCCGATGAGGATCTTCAATCCGGACGCGTACTGCGACCTCTGCAACAAAGAGTTCTGCAACAAGTATTTCCTAAAAACGCACAAGGCGAACAAGCACGGGATCTACGTCGACTCGCCCGGTCCCAGCACCGCGGACAACAATCTCGCCGGATCGCTCTATCCCTCGAACTTTCCCAACACCATGATCAAGCTGGAACCGCCGGCGACCCCGCCGACGCCGAGCGTCGCTTGCGATCTCTGCCAGAAACGCTTCAAGAACGAGGATTCGATGCGCAAGCACAGGCTGAAGATGCACAACGAGCTGTCGCAGGATCAGTCGCAGGAGGCCCAGCCGGCGATCATGTTCCCGCAGAACGACGAGGACAGGGAGACCCCGAGGGACAGTCCGGGCGGCATGGAGACCCTCTTCAAGCAGGAGTACGGGGTCGAGCAGGAGGACGCGACGTTCATGCCGGCGCCGAGACACCTATCGCCTCAATCGATTCAGCAGGCGAGGGACGCCGGCTTCAACGCCGATCGGCTCCGTCGTTTGGGTGTGATCAATCCGGAGGCGTTCTGCGAGATATGCTGCAAAGAGTACTGCAACAAGTATTTCCTGCGCACGCATAAGATGAAGAGGCACGGGATCTCCGTGCAGGAGAACGAGAAGTCGCCGAGCAACCCGGGATCCGCGGCAACCTGGCACCAGGTGCAGACCAGCCCTTTGAACCTGATCGTGGCGGAGAGCGCGTGCAGCACCGAGTCGAACGAACGCGCCGGGGAGGACTACGAGTGCAAGACCTGCGACATACGGTTTCAGACGGTCGGACTGTACCAGGCGCACTGCCGGAAGATGCACGAGAGCGAGGAGCAACGGTCGCCGAAGCTGGAGACCGACCTGGACCAGACGGATCAGCGCAACGACTCGATCTCCGAGGATCTTCAGAAGCTGCAGACGATGCTGCTGCAGCTGAACGGGCTGAAGTCGGGCAAGGGCCTGTGCTGCGCCGTGTGCGGCAAAGATTGCGACAGTAGAACGACCCTGCACATTCACATGGTGACGGAGCACGGCGCCATCGGGGAGGACGCCGGATCCTCGCCGCAGGACAAGTCGCCCTTGACCACCGGCACCTCCTCGTTCTGCAGCTTGTGCGGCAAAGAGTACCCGAGCCAAGACGCTCTCCGGAGACACATCGCCGAGGATCATCAACCGGCGATCTCCGCTTCCGTTCCGCACGCGCCCACGACCACGGCCACGGTGACCAATTCCACGCCGACGACGCCGAGCGAGAAGAAGGTGATGTCGATGACGCCTACGTCCAGCTACTGCGAGATCTGCAACAAGGAGCTGTGCAACAAGTACTTCATGAAGACGCACATGCAGCGGATGCACGGCATCGAGATCGAGAACGGGGCGCAGATCGGCGGCGTGATCTGCAACATCTGCAACAAGGAGCTCTGCAGCAAGTACTTCCTGCGGGTGCACAAGCACAACACCCACGGCATCGTCGACGAGAACACGCCGAGCTCGACGAAGCAGGAGGCTCACGAGCCGGCGAACACCGACGACGCCCTGAAGCCGGAACAACTGGGCGATCTCAGCCACAGATACTTCACCCACTTCACCGAGGTCTGCCCGATCTGCAACCGAAGGTTCCGCAGCATCAAGTGGCTGAAGGCGCACCTGATGGGCGACCACGGGAAGATGGGCGTGGACAAGTGGCGCGAGATGGAGCAGCAATACCAAGCGACGAAACCGGGCAACCGTGGCTCGAACACCATGAAGAACGTCCCGAACTCGAACCTGAAGATACCGAACGGATTCGACGTGCCGCAGCAGATCAAGTCGGCCGAGTACGCCGCCGGCCTGGGCAACCAGGTGCTGTCGAATCTGCTGGGATCGTCCTCGGAGGATCAGCAGCTGAAGAGCTACCGTTGCTCCTATTGCAACTTCACGACCACCGTGTTGCCGTTCCTGTTCCTGCACGAGCGGTCCCACGTGAACGCGCAGGAGGCCACCGGGGACGGCGAGAAACCGCTTCAGTGTCCGATCTGCTCGCAGGGCTTTCACCAGCCGGAGGTGTTGCATCAGCATCTGCTCGCGACGCACCAGTTCCCCGCGTTGCTCTCTCACTTCCAGCCCCCGGTGCCGAACAACGTGGACCCGGAGAAGCTGACCGAGGTCAAGGAGAAGTTCGACCAGCCGGAGGGGAAGGACGATCGCGCGGGGGACAGTCCGCAGGTCACTGCCAATCAAACGATCCCCGAGTCGGTCCGGGGTCAACGACAGGAGGACACGAGCACCGCGGCGGTCCAGGTGACTCCTCAGGGTGTGTACAAGTGCGCGCAGTGCGGCTACGCGACGACCAATCTGAACCGGATCAAGAAACACGTGAGGAAGGATCACAAGACGATCGGCGATCCCACCGATAGCGTGCTCGCCGAGCTGAGCAGAACCCTGAAGGACGTCGCGAACCGGCACAAGATGCCGGCCTGCTACGCGATGCCGCAGGACATGAACTCGAACCCGGACAAAACGATCATGCAGCCGTTCCTGATCGAGGAGCAGGAGATCGCGCGGACCGGCGAGGAGTCCGGCACAGTCGAGAAACGATTCGCGCAGGCCCTGGTCTATTTGCCGGTGAAATCGCGGATCGGCAACACCGTCACCGCCTCGTTCACGCTGAGCCCCGCTTGA
Protein Sequence: MAHESTMSDLTELDSDGSSCGERGDARKRLRVDVDSTGPKKRRKQTTPVRFSSTLTSGVHEESNEDEEEDEGSEGKLSTQSPIPSQSSTRGDDNNPGNELRCQYCSQFFEGKAALNLHLDCEHGSSAPPNRIGSPIGAIKAEPSPHQQPDQSENPVNLLSVKSFATNWLGASGQHVQSQMQTTPNEELWPAPVNQLAALPSHLQSLPGFPGALAQYLPLPAFPLTDSSHIVRPPMGQTPMRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDSPGPSTADNNLAGSLYPSNFPNTMIKLEPPATPPTPSVACDLCQKRFKNEDSMRKHRLKMHNELSQDQSQEAQPAIMFPQNDEDRETPRDSPGGMETLFKQEYGVEQEDATFMPAPRHLSPQSIQQARDAGFNADRLRRLGVINPEAFCEICCKEYCNKYFLRTHKMKRHGISVQENEKSPSNPGSAATWHQVQTSPLNLIVAESACSTESNERAGEDYECKTCDIRFQTVGLYQAHCRKMHESEEQRSPKLETDLDQTDQRNDSISEDLQKLQTMLLQLNGLKSGKGLCCAVCGKDCDSRTTLHIHMVTEHGAIGEDAGSSPQDKSPLTTGTSSFCSLCGKEYPSQDALRRHIAEDHQPAISASVPHAPTTTATVTNSTPTTPSEKKVMSMTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVDENTPSSTKQEAHEPANTDDALKPEQLGDLSHRYFTHFTEVCPICNRRFRSIKWLKAHLMGDHGKMGVDKWREMEQQYQATKPGNRGSNTMKNVPNSNLKIPNGFDVPQQIKSAEYAAGLGNQVLSNLLGSSSEDQQLKSYRCSYCNFTTTVLPFLFLHERSHVNAQEATGDGEKPLQCPICSQGFHQPEVLHQHLLATHQFPALLSHFQPPVPNNVDPEKLTEVKEKFDQPEGKDDRAGDSPQVTANQTIPESVRGQRQEDTSTAAVQVTPQGVYKCAQCGYATTNLNRIKKHVRKDHKTIGDPTDSVLAELSRTLKDVANRHKMPACYAMPQDMNSNPDKTIMQPFLIEEQEIARTGEESGTVEKRFAQALVYLPVKSRIGNTVTASFTLSPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00966247;
90% Identity: iTF_00024826;
80% Identity: -