Hrub000347.1
Basic Information
- Insect
- Halictus rubicundus
- Gene Symbol
- -
- Assembly
- GCA_028454235.1
- Location
- CM052172.1:3928007-3930841[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.25 21 5.8 0.5 2 23 317 339 317 339 0.83 2 8 5.2e-06 0.00043 20.5 1.1 1 23 357 380 357 380 0.98 3 8 1.7e-05 0.0014 18.9 1.9 1 23 403 425 403 425 0.98 4 8 1.1e-05 0.00092 19.5 2.2 2 23 431 452 430 452 0.96 5 8 0.00023 0.019 15.4 7.0 1 23 458 480 458 480 0.98 6 8 0.00015 0.012 15.9 3.5 1 23 486 508 486 508 0.97 7 8 1.2e-05 0.00098 19.4 2.4 1 23 514 536 514 536 0.97 8 8 0.0025 0.2 12.1 4.0 1 20 542 561 542 562 0.94
Sequence Information
- Coding Sequence
- ATGTGTGCACGACTATTAGCGTGTCCTTTATGCTCTCAACCAGGATTCTTAACATTGGATGCACTACGAACAGGATTAATAAGTGTAGCAACTCGACCTCTTTCATGCCCAGTATGTAATGAGATATTGCTTGGTATTGATAAATTGACCATTCATTTGTTTAGTCACACTATCAATTTGCATAGCAACAATACAGTGGAACCTTTGAAACATACAAATAGTTTTATGAACAATAACAATTCAGGAACAGTACATAATTTGCAAAATATAAGTTTTCATGATTGGAATGTATGTAAGGTACAAAGTGCCAATTTAAAATCTTCTAAAAATGTACAAACTACAGAAAATGAAATTCCAATTTTAAATTCAAGAGTTTCTATACAAGAACAAAATTTGCCTGTAAATAATACACCTCAAGTTGCATTTCTACCAAATTCAATTTGCAAAAGTGAAGGAATAAATGCAATTCATAAAACACATGAGAATGATGAAATAATGCCAAAAGTAAACAAAGAAATGATACAAGAAACGATGAGAGTAAATTATGCCACACAGAATTATGTTACAAACAATATTAAACATGCAAACACTGTTCAAGATCATGCTCAAAGAGAACACGAAAATATACAAAATTTTAAGCAATGGACTGGGAATCAACATTGCGAGGAACAAACTTCTATAAATGAAAATATAAGAACAGAAATTAAAGACAGCTGCAGCACTAAACAAAACTACAATGAACAAGTAACGTCAGTGAATAAATATCCAGTAACAAGTGTTACAACAATTTGTACTAATACTGTGGTGGAAAAGTATAACGATGAAAAAAGTGAGCAAGATAATTCATTAACTACATGTAATGAAAATCAATCTGAAATTTTGGAGAATGGACAAATATTGTCTGAACTAAAACAAATTAAACCATCGCCTACAAAGGAAAAGATTGAACGTTGTAATATATGCGGCTTTCACTTTCCTGACTATAATATTTTACTTTTACACAAACAATTAGTGCACATGATCAATGAGAAAGATTTGAATGTCATTCCTGAAAATTTTCTTAAAAGTTATTCGTGCCATTTATGTTCTAAAATATTTAAGATGCGTGGTAGTTTAATGGTTCACATGAGAGTAGCGCATATGGGATACAATTTAGGTTCTTTAGCTAAAGGTGGACAAGTAGAACTCATATTTAATGAGAATAAATATAATTGTCCAACATGCGGAAAAATATTTAAAAAGGAGCAACATGTAATACAGcatttaaaaactcatgaagcaaagcaatgggaatgcgatgtatgcagtaaaatgttcacaacaaaatattttttaaaaaaacataaaagattacattcaggagaaatgccttacaaatgtaatatatgtaacaagacattcactttccaacaatcataccacaaacacagattatatcataaagacgataaaccacatacatgtgcaacttgtggcaggtcatttaaagagctatctactttgcataatcatgaaagaattcatactggggagaaaccttttgcatgcgaaacttgtgGAAAGTGCTTCAGACAACGTGTATCTTATTTAGTTCATCGTAGAATTCACACAGGTGTTATGCCTTATAAGTGTACAATATGTGGAAAAAATTTCAGATACAAGGTAAGCCAGAGAACTCATAAATGTCCAGCACAACAGATGGGAAACATGCAACAAACGAATAGTATTGATCTCCAGATACCACAAGTAACAAATACACAAAATTTGAATAGTAATTCATGTAAAATTCAGAAGAGTTGTATAGAAGAGAATCAACCCATTTTGAACGTAATAAATGACGAAGAAAATAAATATGTCCTAATAATAAATACTCAAGGACAACACCTGCTAACAAAGGAATTAAATATTAGTAATTCGCAAGTAATTCAAGAAAAAGAACAAAAATTGGATGAGTGCATGGGTCCAAACGAGGAAATAAGAAACATTTGGAAGAATAACATTCCTGATAATTCTATATTTAAGGAATCAGATGAAATATCTACAAAACTGTATACAGAAACTGAGAAACCACTTCAAGAGGATACGAATGACTTATTTTCAATGATAATATCTCCACTCGAAAATGGATTATCTTCTCCCACGACTGAAATGGAACATTTAAGATTATCATCGCCAGCACAAAAAGAAGATGGTTTAAAATCTTATAATAGCTTTAGAAATACAACGCACAAAGCAAACATAGACAATACAAGAATGGAACAAAGTTTTAATAGTCATGATAACGTAACGAATACTTTACAAACTATAAATGAAGAATCTTTAAAGCAACTTCTATATGGTATTAACGAAAAATAA
- Protein Sequence
- MCARLLACPLCSQPGFLTLDALRTGLISVATRPLSCPVCNEILLGIDKLTIHLFSHTINLHSNNTVEPLKHTNSFMNNNNSGTVHNLQNISFHDWNVCKVQSANLKSSKNVQTTENEIPILNSRVSIQEQNLPVNNTPQVAFLPNSICKSEGINAIHKTHENDEIMPKVNKEMIQETMRVNYATQNYVTNNIKHANTVQDHAQREHENIQNFKQWTGNQHCEEQTSINENIRTEIKDSCSTKQNYNEQVTSVNKYPVTSVTTICTNTVVEKYNDEKSEQDNSLTTCNENQSEILENGQILSELKQIKPSPTKEKIERCNICGFHFPDYNILLLHKQLVHMINEKDLNVIPENFLKSYSCHLCSKIFKMRGSLMVHMRVAHMGYNLGSLAKGGQVELIFNENKYNCPTCGKIFKKEQHVIQHLKTHEAKQWECDVCSKMFTTKYFLKKHKRLHSGEMPYKCNICNKTFTFQQSYHKHRLYHKDDKPHTCATCGRSFKELSTLHNHERIHTGEKPFACETCGKCFRQRVSYLVHRRIHTGVMPYKCTICGKNFRYKVSQRTHKCPAQQMGNMQQTNSIDLQIPQVTNTQNLNSNSCKIQKSCIEENQPILNVINDEENKYVLIINTQGQHLLTKELNISNSQVIQEKEQKLDECMGPNEEIRNIWKNNIPDNSIFKESDEISTKLYTETEKPLQEDTNDLFSMIISPLENGLSSPTTEMEHLRLSSPAQKEDGLKSYNSFRNTTHKANIDNTRMEQSFNSHDNVTNTLQTINEESLKQLLYGINEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00861413;
- 90% Identity
- iTF_00864843;
- 80% Identity
- -