Hrub007990.1
Basic Information
- Insect
- Halictus rubicundus
- Gene Symbol
- -
- Assembly
- GCA_028454235.1
- Location
- CM052175.1:20569974-20609072[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0085 0.7 10.4 0.1 2 23 46 67 45 67 0.97 2 14 0.0066 0.54 10.8 0.5 2 23 80 101 79 101 0.95 3 14 0.0042 0.34 11.4 1.0 1 22 177 198 177 198 0.97 4 14 0.0052 0.42 11.1 2.7 1 23 360 382 360 382 0.98 5 14 8.9e-05 0.0073 16.7 0.9 3 23 392 413 391 413 0.96 6 14 0.0068 0.55 10.8 0.3 1 23 559 581 559 581 0.94 7 14 1.7e-06 0.00014 22.1 1.6 2 23 588 609 588 609 0.97 8 14 0.00019 0.016 15.6 1.0 1 23 698 720 698 720 0.98 9 14 0.00013 0.011 16.1 2.7 1 23 726 748 726 748 0.96 10 14 0.00022 0.018 15.4 3.8 2 23 1111 1133 1111 1133 0.97 11 14 0.0018 0.15 12.6 2.0 1 23 1137 1159 1137 1159 0.98 12 14 0.0086 0.7 10.4 2.0 2 23 1166 1188 1165 1188 0.93 13 14 0.00012 0.0095 16.3 1.3 2 23 1616 1638 1615 1638 0.96 14 14 0.00042 0.034 14.6 5.8 1 23 1642 1664 1642 1664 0.99
Sequence Information
- Coding Sequence
- ATGCTACCTCAGGACCAGGAGCACTGCGAGGTGACCGAGATTTTCGAACGGGAAGAGACAACAGGGCAGCTGTTGATCGCAGATCGTGTGCCGAAGGTTGAGGACGACGAGATAATCATCACTGAGAATATTGTACAGTGCAGTCTCTGCGGAGACAGTTTCGTGTCCGAGCAGGCTCTCAGGATGCATCTAGAGATGCACGAGCATGGTAACGTTCAGCTGTCGGATGATCATCTAGTTTGCGAGCTGTGCGGCTGTAGTTGCGAGTCGAGCGCTGCTCTGGAGGAGCATCAGCTGGAGCACGAGACGGACGAGGCCAAGCGAAATTTTCCGAGCAGCGTGTCCGATCCCACTTCGGCATATGTCTTGTTATCTGTTTGCAGATCCAACATCGCGAAGCAGACATCCGCCGGGCCGAATCGATCTCGCAAATCGTCAATGCCGAAAGCTAGAGTCTTAGTTAGCCCCGAAGACGTGTCCAGTAAATTCTCGATCGTCCGGAAATCTTTGCGCAATACCGAAAAGAGTTACTCGTGCGACGCGTGCCGCGAATCCTTCCCGAAGAAGATGCAGCTGTTCAAGCATCGGCGAACGCGTTGCAAGGATTCCGACGCGAATCGGTGCGAGGAGGAAGTCAAGATCGAGTACACGAAAATAATAGAACCGATTAGCACGTTGGAGGATATGGAATTGGTGAAGTACCAGACCGAGGAGGTTTGCGTCGAAGAGTACGAGGAGATTAGTCAGCAAGAAATAATCACGGAGACGTTAGAGTTCATCGAAGAAACGGAGACGCAGCTGGACCTGGAACCCGAACCCGAACCAGAACCCGAAACAGAAGTAGAGCTTGAACTAGAAGGAGAATTTGAATCGGAAGAGGCGCTTAAGCCAGTAGCGCAAGTTGAATCAGAAGTAGATATTGAATCAGAAGCGGAGCTACATTTGGAACTAGAACCTGTATCAGAACCAGAACTAGAAATGAAACTAGAAATGGAGTCGGAACCAGAATCAGAGTCGGCAATAACGATGAAACCGTTCTACCACGACGGTGATCCGAACAGGAAGTGTTCGGTGATctacgagtgcgacatctgcaagaagaggatacgcaagaagacgctcttcctgaggcacaggcagaaccatgagaggaacggagatgagatcgggcactgcgacgagtgcgacaagtcgttcgccgacgacgagaagttgaagaagcacataatcaaggtgcaccagaaggagaagccgtaccaATCTACAGAACCGGCAAGAGGACGAAGAAGTAGTTCAAGCATCGAAAAGTTGGTTTTGACCACGATCGAGAACGAGAATATTCCTGCGAGAACCGTCGAGCTTTCATCGCTGAACTCGGAGGTCTTGCAGAGGCTCGAGCAAGAAACGGAGGACGCGGAGAAGAGCTCTTCGTCGCCGGATCAATCCTCTCAGACGTACAACCAGCTACAGTTTTCCGAAGAGTATTATCCGATGTTGACGAAGCTCGACCTGATGAAGAAGGACGCGACCAATCCGGTGCCGAAAAGTCCCCAGATACCCGGTGCGGGCAATGTATCGTCGACGATGGCGGCAGCCCCATCGGCGAGCCAGGATCAAAGCTTCATAAAGCAGGAGGTGAACGACGAGGACGACGAGGAGGATCTGCCGTTGGCTTATCACTGTAAACTGTGCGGCGTATTCTTCGCGTCCCAGGCTCTGCTGGACAACCACGAGATCGAGCACAGAGGGAAACGGAAGAACACGTGCGCCCAGTGCGGAAGGGTGTTCCGTACGTACGTGAACCTGAGGAAACACATGAAGAAACACTCGGGTAGAAAAGGCGGCCGGAAAGCCGGGAATACCACGGTGAACCGTTCGTCGTCGCTGAAGgtgaagaaggagaagccggaactcgaACCCGCGGGGATAATAATTTGGAACGCGATACCTGCAGACTTCAACATCGTGGAAGGTCGATCACGATTCCGTCGATCTTCTTTGCTGGAGGAACGATCGATCGCGAAGAAAGCTTTGGATGAGCACAGGTACGCTCGTATCCCGAAAGAGAGGAGGCGAGACAATCAGCAAGATTATTCGTGTGACCTTTGCAAACGGAAGTTCGTGAACCGGGGTGCCTACGATCGCCACATGATCAAACATAGCAACGAGCGTCCGCACAGATGCGATACCTGCGATAAGAGGTTCAAACGTCGCGCACAGCTGGTCGATCACACCGGCCGTCACGAAAACGGCGTTTATGGCTGCGACTTGTGCACGTTCACCACCAACAGCAAGGTCTCGGAATTGTTCAATTCTCATTATGTAACTTGTAATCATTATACATCCCCTCACCTTGAATTATCCTTTCGTTTAACGGCTGAAAACTATGACGAGTGTCTTCGGACACGGATGTCGGCGATCGCGGATACGCGTAACCCGGGGCTACCGCTTTTTGTAGACTGTCAGGGAGACTCTAATATCGAATACGATCCAGAGGATTCGATAGAGATCAAATCGCCACCGATCTCCGATGAAGAGATGGACGACGACGACGACGCGTACGCCGAGGAAGAGCTGAAGGGCGAGGATTACCAGAGCGACGTCGACAAGGACAGCTACATACGCATCACGAGTTGTCGTTCCCTGTTAAACGAGGTCCACGACGATTCCTTGTCGAGCAAAGTGACGACAGAGGTCAGCAACGACTCCACGACGGACGCGGCCAGGGGTGGTCCCGCTGCGAGCAGAATTCCGACGGTGGTGGTGCCAGTGATCAACGCGGAGACCAAAACAATGACGAATACAGTAGTGCCGGTTGAAATGATAGATGATACAGGGCTGAACATAATCAAAAGCGTACTGGTACCGATGCCGACCCTAGATGGGTCTGCGCGCTACGAGGTTAAGAAAGTTCTAGTACCGATCCAACCACAACTAAGTTTGCCAATTGAAACGCCGATTCTACCACCTCCGAGCTTGCCGGCTAAAATACTGATTCGACCACCAAGTTACCCAGCTACAATGCCGATTCAGCCACCACCGAGTTTGTCAGTTCAAACGCCACCTAAGCCTTGGACGCCTCAAAAAGACCCGGTTCCAACCCAGCCAACAATCAATCTACCAGCCAATCCAACAACCAACCTACCGGCTAAGTCATCAAACAAGATACGAAAAATATTACCCAAGCTGATGCCGATTGAGACGGTGGGAGAACCGTGTGAGGAAGTGGTAGAAGAACAGATGGAAGAGACGGAGGATCCTTTGAAGGATAAGAAAATCATAGGCGACGATCTCGATGCGATGGATAAGATGTTAGACGATCTGCGGAACACGTGCCCGTTGTGCCAGTTGAGCTTCAAAACGCAGCATAAGATGGAAAGGCACATCCGTCGACGACACAAAAACGTGTTCCGCTGCAATCAGTGCCATTTCAGTTACGATTCCGCCGAAGCCCTTGAGGACCACAAGAAAAGCCACAACAAGAACACCTACATGGAGTGCAACTTGTGCCATCGGAAGTACAAAAGCATGAGTTGGCTGATGGCGCACCGGGTTCGCAAGCACATCACCGAAGACCCAAAATCGATGCGCGATCAGGTCCCGGAAGAACGCGAACCTAAGTTCAATGCCGAGGACCCGGACACTTGGGGACGGCGTCAGTTGCTGGGTAGAAGTTACTCTtgcgagaagtgcaacaacgtGATGTCGACGACCGCGGAAACCATACAGTATCCAGCGCAACCGCTTTTTGTAGAATGTAGTGGGCCGGCACTTCTGGACCAAGATCAAATGTCTATTAAAAATAACACATCCCCGATGTGTGACGTCAAGGAAGAGCATTGCATGCTGAGCGACACTGAGAACGGACACTCCATGGACGATGACGGCCTGTGCCTGGGTGGCTCGAGTTGTCTTTCGGTTCCCAGTGACGTCACGCAGACTGAGCTTAACAACGATTCCGTGAAATACGATTTAAATAGGATGCCAATACTGACGTTTCTGGTGCCGGTCAGGCACCCGGAAACGAGGCTAATTCAGAACGTATTAGTACCGGCGGAAGTGCGGGACGAGTCGGGAATGAACATAATCAAGAGCATCTTGATACCGGTCCAGGAGTCGGATGGCACGGTGAGTTATGCGATCAAGAACGTAACAGTCCCGATGGCACCCGAGTTGAGCTTGCCTGAGAAACAAGTGAAAGAGACAAAATCGAAGCCAGTTAGAATCGACGCTACTGAGAACCCAGCTCAACCACTTTTTATAGTATGTTCCGGAGTTCCAGACATGGATCAGGACGATCGGTCCAAAACCTCAACGAACTCTGAAAGCAACGACACTGGTGGCCCCGAATGTGTTCAGCTCGATGGTAACGAAACTGATTGGTGCAACGAAAGTGACGTTAACGATAATTTGGATTCGGATGAGCCGACGAAATATGGTACAAACTTAGCGTACGACGAGCAATCATCGAAGGAGGACACCAACGATCCCTTGCTGAACGGTGTCACCGACGATTCCGCGGATGAAAGGTTCGGCGTTCAGTTGAAGTCGGTTCTAGTGCCTGTGAGGGATCCAGTGACGAAAAAAATTAAACACGAATTAGTGCCTATCGAAATCAAGGACGAGACAGGATTGAACATAATCAAAAGCGTCCTGATTCCGGTCGAAGATCAATACGGAGCTGCGTGCTACGAAGTTAAGAAGGTCTTTGTGCCGATCAGACCAGAACTAACTTTGCCGCAGACTGCCCTAGGCAAGAGTAAAGATGGAGACAGGCAGAGTAAGGAAGAAAATGGAAAAGATAAATCGGTGAAAGAAGAGGACAAGATACTGAATGTCCAACAGATGTGTCAGTTTTGCCAGAAAGTCTACGACACGCAGCAAGCGTTGAACAAACACATTCGCAGATTCcacgagaggccgtaccaatgcgaccactgtcaccacgcctatgtttcgaaggcagcctacaaggagcatatgaagacacacgcgatagatacACTCGTATCACATCACGACAAAACGACGGTTGTCTTCCAACAACAATTACCAATGCCTGGAAACAGCTTTGCAATAAATTCATCGACAAACTGGGAGCAGCTAACCGTATCAATGACGTATCTGCTCTCGGACCCATCGATGCAATTTATAGAACAAACGATACACGATACACACTGTCCACCGGAATGCTTAGCACCAATACAAAGTTCTCTGGTAAAGCTATCAATTCATCCTGAACAGACGGATCCTCTGCAGAATTCACAGATACAACACGAAGACTCAAAGAAACTCAATCGCCTCAATATCTCGCGAAATGACGAAGGCTTTAAGACAACCAAGGAGGAATCCCCTAAAAGAGCCAACACGAACAACGCCAAGAAACATGACGGAATGAtcgacccgGACGAGAGGGTACGACTCTCTCCACCATTATCTCACGACACGAACTGTCGACAAATATTATTTGTTGACAAACAGGAAGCAAATAAAACAGAAAGTAACGGACGTCAGGGTTATAAACGAGTTTTCTACTCAACTGTTGGAGGCAGTCACCAGAGATTTAGTCAACGAGACGAACAGACGAGCACCTGA
- Protein Sequence
- MLPQDQEHCEVTEIFEREETTGQLLIADRVPKVEDDEIIITENIVQCSLCGDSFVSEQALRMHLEMHEHGNVQLSDDHLVCELCGCSCESSAALEEHQLEHETDEAKRNFPSSVSDPTSAYVLLSVCRSNIAKQTSAGPNRSRKSSMPKARVLVSPEDVSSKFSIVRKSLRNTEKSYSCDACRESFPKKMQLFKHRRTRCKDSDANRCEEEVKIEYTKIIEPISTLEDMELVKYQTEEVCVEEYEEISQQEIITETLEFIEETETQLDLEPEPEPEPETEVELELEGEFESEEALKPVAQVESEVDIESEAELHLELEPVSEPELEMKLEMESEPESESAITMKPFYHDGDPNRKCSVIYECDICKKRIRKKTLFLRHRQNHERNGDEIGHCDECDKSFADDEKLKKHIIKVHQKEKPYQSTEPARGRRSSSSIEKLVLTTIENENIPARTVELSSLNSEVLQRLEQETEDAEKSSSSPDQSSQTYNQLQFSEEYYPMLTKLDLMKKDATNPVPKSPQIPGAGNVSSTMAAAPSASQDQSFIKQEVNDEDDEEDLPLAYHCKLCGVFFASQALLDNHEIEHRGKRKNTCAQCGRVFRTYVNLRKHMKKHSGRKGGRKAGNTTVNRSSSLKVKKEKPELEPAGIIIWNAIPADFNIVEGRSRFRRSSLLEERSIAKKALDEHRYARIPKERRRDNQQDYSCDLCKRKFVNRGAYDRHMIKHSNERPHRCDTCDKRFKRRAQLVDHTGRHENGVYGCDLCTFTTNSKVSELFNSHYVTCNHYTSPHLELSFRLTAENYDECLRTRMSAIADTRNPGLPLFVDCQGDSNIEYDPEDSIEIKSPPISDEEMDDDDDAYAEEELKGEDYQSDVDKDSYIRITSCRSLLNEVHDDSLSSKVTTEVSNDSTTDAARGGPAASRIPTVVVPVINAETKTMTNTVVPVEMIDDTGLNIIKSVLVPMPTLDGSARYEVKKVLVPIQPQLSLPIETPILPPPSLPAKILIRPPSYPATMPIQPPPSLSVQTPPKPWTPQKDPVPTQPTINLPANPTTNLPAKSSNKIRKILPKLMPIETVGEPCEEVVEEQMEETEDPLKDKKIIGDDLDAMDKMLDDLRNTCPLCQLSFKTQHKMERHIRRRHKNVFRCNQCHFSYDSAEALEDHKKSHNKNTYMECNLCHRKYKSMSWLMAHRVRKHITEDPKSMRDQVPEEREPKFNAEDPDTWGRRQLLGRSYSCEKCNNVMSTTAETIQYPAQPLFVECSGPALLDQDQMSIKNNTSPMCDVKEEHCMLSDTENGHSMDDDGLCLGGSSCLSVPSDVTQTELNNDSVKYDLNRMPILTFLVPVRHPETRLIQNVLVPAEVRDESGMNIIKSILIPVQESDGTVSYAIKNVTVPMAPELSLPEKQVKETKSKPVRIDATENPAQPLFIVCSGVPDMDQDDRSKTSTNSESNDTGGPECVQLDGNETDWCNESDVNDNLDSDEPTKYGTNLAYDEQSSKEDTNDPLLNGVTDDSADERFGVQLKSVLVPVRDPVTKKIKHELVPIEIKDETGLNIIKSVLIPVEDQYGAACYEVKKVFVPIRPELTLPQTALGKSKDGDRQSKEENGKDKSVKEEDKILNVQQMCQFCQKVYDTQQALNKHIRRFHERPYQCDHCHHAYVSKAAYKEHMKTHAIDTLVSHHDKTTVVFQQQLPMPGNSFAINSSTNWEQLTVSMTYLLSDPSMQFIEQTIHDTHCPPECLAPIQSSLVKLSIHPEQTDPLQNSQIQHEDSKKLNRLNISRNDEGFKTTKEESPKRANTNNAKKHDGMIDPDERVRLSPPLSHDTNCRQILFVDKQEANKTESNGRQGYKRVFYSTVGGSHQRFSQRDEQTST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -