Hrub011327.2
Basic Information
- Insect
- Halictus rubicundus
- Gene Symbol
- -
- Assembly
- GCA_028454235.1
- Location
- CM052169.1:14849088-14851947[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0058 0.47 11.0 0.6 1 20 23 42 23 44 0.93 2 11 0.00016 0.013 15.9 1.6 1 23 86 109 86 109 0.98 3 11 5.5e-06 0.00045 20.5 0.3 3 23 117 137 116 137 0.98 4 11 2.7e-05 0.0022 18.3 3.4 2 23 144 165 143 165 0.96 5 11 6.6e-07 5.4e-05 23.4 1.2 1 23 171 193 171 193 0.98 6 11 0.0067 0.55 10.8 3.2 1 23 240 262 240 262 0.96 7 11 4.8e-07 4e-05 23.8 1.9 1 23 699 721 699 721 0.98 8 11 0.001 0.083 13.3 2.1 1 23 728 751 728 751 0.96 9 11 0.00031 0.025 15.0 0.4 1 23 759 782 759 782 0.96 10 11 3.1e-05 0.0025 18.1 5.4 1 23 788 810 788 810 0.97 11 11 0.00013 0.011 16.1 4.2 1 23 816 838 816 838 0.98
Sequence Information
- Coding Sequence
- ATGTCAATCGGTATAAATTTACAAGAAAGTTGCAGGAATGATGAAACTGAAATGCAATTTACAAATTTTGCCTGTCCAATCTGTGACTTCTTGTTTACGAATAAGGAAGAATTTTATGATCATTTGCATAATTATGCTGGAGACGGATTATTGAAACAATTCTTAAAGATAGACATAAATAGCGAATCTCAAACGGAAGTAAAACATTGCAACCAAGAGAAATCTGATAAGTCGCACGAAAACGTAGCAAGGCCTTTCAAGTGTCAACAATGCGACTTAACGTTCGACCGAGCTTCTCAGTACGATTATCATTATCGAAGTATACATTTAGGTGAGAAGTCACAACTTTGCGAAATCTGTGGCAAAGGTTTCTTTAGAAAAGCTGACCTACGAACGCACTTAAATATTCATTTGGGAACTAACACTTGCATTTGCGAAGTTTGTGGGAGAAAATTCAACCACATATCTAATCTGATCAGGCATAGTAGAATGCATGCTGGGATAAAACCATATCCATGCTCAATTTGTAGCAAACGCTTTACACAGATTAGTTCTCTTGCCAGACATAAGCGTACTCATGTGAAACCAAAAAAGGATGTACATGAGGCACAAAGTAATATCACTAATACCAATGCTGAGAAAAAGGATCACACATTAAACAAGAATAAGTCTGTTGAAGGTAATGCACTTGCTCAACAAAAGATTCTTAAAAGACAACACTATTGTAAGACTTGTGGTGAGAGTTTCAGTTTAATTTTACATTTGCGGGAACATGAGAGCACTCATTCAAAGAATGCAACCATTTCGGAGTGCAAGAATAACGAAATGAATTTTCAGAAAAATTCGGTACTCGAGGAGAATTTCGATTTTTTTGAAAACGAGGAAAATATGAAAAGAGTATTGCCATTGGAAACGATCATTTATATTACATCAGAACAGTTGAAGAAAATTAATTTGGAGAATATTGAGAACACTAAGAATCATGTCGCACAAGAACACTTTTGCGATGATATTAACGAGAAAATTCCATTAATTGAGGAATTAACTGATTCTGAGAAACTGATATCCAATAATGAAATACTTCAAAACGTACTGTATGTGTGCGAAATGGATGAACCTGTTCTAAAAAGCAAATTGAATACAAAATTCTCGAACAGTCAGGAGTATTTATCATGTTCACAAACGTATGAACTGGACTTACAGAAATCAGAAGTACCACAAAATTATAATGCTTCGGCAAATATTTCTCTCAATGTTACTGATATGTTTCAAAAGATAGATTTATCAGAATCGAATATCGATGAACATGATAAGCTCGATTTAACTATTCAAAATCACCAAGAAATAAATGTGGAAGAAAACGCAAAGGTTGTTGAGGGTATAAATGATGAAAATAATGTTACAAATCAGGAAGAACCAATGCTACGTTTAGTACAGACAGAAACAGGGGAACAATTTTATGAATTTTTAATTAATAATTTAGTAGAAAAACTACCGAACATACAGTCCGTAAAAACGTCCGAAAATAAAGAGGAGACTACAGATATTTCCGAAAATGTAGCAAACATGAACGATGACGTCCAGCCTGAACAAAATATAAGAGACGATATACCCAGTGATCTAAATTATACGCAATACGAATTACAAGGGGAAGAGAAAAGTTTCGCCGCGAGTCAGATCTTACTTGATCCACAAAATGATTTTGATAAATACGTTGAAACGAATTTCGAAGTTTTTGAGCGATTAAACTATGACGACAGTTCCGAAAGATTTCTGAAATTCGTGGAAAACGCAGGAGTTGAAAATCAAAGCTCCAAAATGTTAGAGTGCAAAGACAACGATCAACTCTTACAATTTCAAAATTTCAGTCAAATCGATTCCATCCAAGAAAATGAGAAGAGTGACGTAATTAACGACAGTGAACAGACTCTTTTGACTTCTCTTAATGATGATATACAATGTGAAATTAATACAAATAATGATCAAATTATTAATGATGGGGAGACACAGGTACAAACTGATGATACCATCAGTAATGACAAGCAAGAGGATCAACAAGAAGATTTGAAAAAATCAAAAGTATATCTGTTAAAATTCCAGTGTACTGTATGTGAAAAATCATTTTCAACCAGTTACAACTATAAACAACATATAGGTACACATTTTGCAGATCAGCAAAAGTTTCATTGCAAAGAATGCAAAATGTCCTTTGCTTGGAAATCTACGTTGAACAAGCATATTGCTAGCAATCACAGACCGGAAGGTCCGCAAAAGTTTGCGTGTGACATGTGCCAAAAAATTTACAATACTTCTTCGCAAGTAAATGAGCACGTGAAACGAGATCACCTAAAACAGAGAAATCACGTGTGTTCTCATTGTGGTAAATCGTTTTTCAAAAAGTACGACTTGAAAATACACAACAGAATACACACGGACGAAAGGCCGTACGTTTGTCCAGCTTGTGGGAAAAGATTCCATCATAGAAGTCATATTATTCGTCACGAACGTATACATTTTTAG
- Protein Sequence
- MSIGINLQESCRNDETEMQFTNFACPICDFLFTNKEEFYDHLHNYAGDGLLKQFLKIDINSESQTEVKHCNQEKSDKSHENVARPFKCQQCDLTFDRASQYDYHYRSIHLGEKSQLCEICGKGFFRKADLRTHLNIHLGTNTCICEVCGRKFNHISNLIRHSRMHAGIKPYPCSICSKRFTQISSLARHKRTHVKPKKDVHEAQSNITNTNAEKKDHTLNKNKSVEGNALAQQKILKRQHYCKTCGESFSLILHLREHESTHSKNATISECKNNEMNFQKNSVLEENFDFFENEENMKRVLPLETIIYITSEQLKKINLENIENTKNHVAQEHFCDDINEKIPLIEELTDSEKLISNNEILQNVLYVCEMDEPVLKSKLNTKFSNSQEYLSCSQTYELDLQKSEVPQNYNASANISLNVTDMFQKIDLSESNIDEHDKLDLTIQNHQEINVEENAKVVEGINDENNVTNQEEPMLRLVQTETGEQFYEFLINNLVEKLPNIQSVKTSENKEETTDISENVANMNDDVQPEQNIRDDIPSDLNYTQYELQGEEKSFAASQILLDPQNDFDKYVETNFEVFERLNYDDSSERFLKFVENAGVENQSSKMLECKDNDQLLQFQNFSQIDSIQENEKSDVINDSEQTLLTSLNDDIQCEINTNNDQIINDGETQVQTDDTISNDKQEDQQEDLKKSKVYLLKFQCTVCEKSFSTSYNYKQHIGTHFADQQKFHCKECKMSFAWKSTLNKHIASNHRPEGPQKFACDMCQKIYNTSSQVNEHVKRDHLKQRNHVCSHCGKSFFKKYDLKIHNRIHTDERPYVCPACGKRFHHRSHIIRHERIHF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00864803;
- 90% Identity
- iTF_00762719;
- 80% Identity
- -