Basic Information

Insect: Halictus rubicundus
Gene Symbol: -
Assembly: GCA_028454235.1
Location: CM052186.1:27028452-27032514[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.015 1.2 9.6 0.2 3 21 8 27 6 28 0.85

2 14 1.6 1.3e+02 3.3 0.0 2 20 34 52 33 54 0.90

3 14 0.79 64 4.3 0.4 1 12 234 245 234 254 0.89

4 14 0.012 0.97 10.0 3.1 1 23 365 387 365 387 0.97

5 14 0.0002 0.016 15.6 0.2 2 23 391 412 391 412 0.97

6 14 0.00055 0.045 14.2 4.9 1 23 423 445 423 445 0.98

7 14 0.031 2.5 8.7 0.1 1 23 464 485 464 485 0.76

8 14 0.00058 0.048 14.1 0.1 2 23 491 512 490 512 0.95

9 14 4.2e-05 0.0034 17.7 4.8 1 23 540 562 540 562 0.99

10 14 1.8e-06 0.00015 22.0 3.7 1 23 568 590 568 590 0.96

11 14 0.00096 0.079 13.4 3.9 3 23 598 618 596 618 0.97

12 14 1.3e-06 0.0001 22.5 0.8 1 23 624 646 624 646 0.98

13 14 8e-05 0.0066 16.8 0.2 1 23 650 672 650 672 0.99

14 14 0.00035 0.028 14.8 0.2 1 23 680 702 680 702 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.015	1.2	9.6	0.2	3	21	8	27	6	28	0.85
2	14	1.6	1.3e+02	3.3	0.0	2	20	34	52	33	54	0.90
3	14	0.79	64	4.3	0.4	1	12	234	245	234	254	0.89
4	14	0.012	0.97	10.0	3.1	1	23	365	387	365	387	0.97
5	14	0.0002	0.016	15.6	0.2	2	23	391	412	391	412	0.97
6	14	0.00055	0.045	14.2	4.9	1	23	423	445	423	445	0.98
7	14	0.031	2.5	8.7	0.1	1	23	464	485	464	485	0.76
8	14	0.00058	0.048	14.1	0.1	2	23	491	512	490	512	0.95
9	14	4.2e-05	0.0034	17.7	4.8	1	23	540	562	540	562	0.99
10	14	1.8e-06	0.00015	22.0	3.7	1	23	568	590	568	590	0.96
11	14	0.00096	0.079	13.4	3.9	3	23	598	618	596	618	0.97
12	14	1.3e-06	0.0001	22.5	0.8	1	23	624	646	624	646	0.98
13	14	8e-05	0.0066	16.8	0.2	1	23	650	672	650	672	0.99
14	14	0.00035	0.028	14.8	0.2	1	23	680	702	680	702	0.97

Sequence Information

Coding Sequence: ATGGGATCGTTGAACCTCGTTTGTCCAATGTGCTGTGGTGAAACTTTCAACAATCCACAGTCATTGAAGTATCATTTATTAAGCATGACGGACAACCTATACTGTCCTGGTTGTTCGCAGCGTTCTGACTCCGTAATGGCACTCATCCAACACTTGGATCGCTGTGGACAGACTGTCGATCCCGAGGAATCAAACAACGAAAAGGAAGACTCTGCGCAAGAAATTCAACACGAATCCGAAACCGATACAACAGTACTGATGGATACCAACGTCGAAGGCATAGACCAAAGTTTCCTAGCGACTGTGAACGACAGTGGAATTATGATAGTCGGGGGGCCTCAAACTATACAAGTAGACGAAAATGGAGAGATTAAAGTCGTAGAGAAAATGGACACGGAAGAGGCACAGTTGGAGCAAAACTCTTTAGAGTTTAAGATGACGGAGAAAGTTCCTAGTACCGCCAAGAAGGACAACAATTCCTTGACCCAGGATCACATAGTAACTATATCGGCAGCGGAGACGGAAGACAAAGATGGAAATAAGAATATAATTACTATTCTACCCGAGGGTTCGGAGCTCCTCGATGGCAACACTGGTGCTCTGATAAATATGGACCACATAAATGATGTAGGTGAATTAGATGAGGACGGGTTATTACATGTGAAAGAAGAACTCTGCGAGTTAGAACCGGAGGCTGTTTACAGTTGTACCAGCTGTGATATGAGTTTCAATTCGGTCGTCGAGCATATAAAACAATATCACGACGGCCAAGAGGTGCTTCTGGAGATAGCCGACCAATTAGACGATCTTCCTACCGTACCTGTAGCTAATACTCTACCAGCAGAGTCGGAAAACGTAGTTAATACAAGACAAAGGCAAAGCATGAATACGCTACGCACGGAGGAATGCGTAGACAGCGAAGGAAGATTGTACACGCGAAAAGTTGTGCAAATAGAAAGGTTTTGGGACAGAGCCCCTGCCCAAACGTCTTTGCAGTCGACCACCAAGGCACCGATGATAGAAAAGTTCTTTTCTAATGTAGAGGGAGTAAAGGTACGCGAGAAGAGATTGGCAGCAGCGCCAATGAGAATGTACAGATGCAATCAGTGCCTTCAACAGTTCTCGAAATTGGGCAACTTCCGAGTGCACGCGTGTCTGCACGGCAACAATCGTTGCGACAGCTGCGACCAAACGTTTGCAACGCCGAAAGCGTTGCAACTGCATGCAAAGGTTCACGAGGGTGAACCGGACCCGAATCAAAAGACGTTCGTATGCGAGACATGCGGTACGGAGTTCTGTTCGCATAAAAGCTTGCGCTTGCATTCTCGGATGCACGCGCCGGTTAGGGCAAGACACGTCGATGCGCCCGAGGGAACGCCCAGCGCCACGTTCACGTGTCCCGAGTGTGGCAAAACATTAGCAGAATCGTACAAGGAAGCGCACATGGCATTGCACACCGGCGACTCTGTAACCTGTACAGTTTGCAACCGGAAGTTCGATTCCGCCGATAGTTTAGCGATGCATGCAGCGGTGCACACGGAGCTCAGTCAGTCGCATTCACCGACGCCACCCGCGACGGAAACTATGACCACGGAGCCCACGGAAAATCAAAAGCCCTATCAGTGCCAGCACTGCGGTCGTAGATTCACCAGACCCCATGAGAAGGTGAAGCATGAACGAATTCACACTGGGGAAAAGCCGCATGCATGCGAAGTGTGCGGGAAAACGTTTCGTGTTTCGTATTGTTTGACTTTGCACATGAGGACTCATACTGGAGTGAGACCTTACGGATGCCAGCACTGCGGCAAGAGATTCAAGGCTTCCTCTGTATACAATCATCATTTGCTGACGCACGGCGAGGAGCGCGCTTACACCTGCCCGTATTGTCCGAAAACATTTAAAACGCGTGTTCAATTAGCGGGCCACAAGAACAGCCACACGAAACCGTTTCGGTGCACCGAGTGTTCACGGCCGTTCGCGTCGTTGTACGCCGCGCGTGCTCACATACAGACACACAAGAAGGACAACAATTTGAAATTCAGTTGTTACATTTGTGGTGCGTCGTACGGCAGAGCGTTCGCGTTGAAGGACCACCTGAAACAACACGGCACAGACATACTGGCTCCGCCGGAACCAGCGAGAGAAGAGGAGGTTCACGAGGGAGAGGATTTCTTGTTGGCGGAGGAGGAAGTGGAGGACGATGAATTAGTCATTCCTTCTCCGTTGCCAGTGGAGCAATCGTCGGAAGCCGAGGACACGGAATAA
Protein Sequence: MGSLNLVCPMCCGETFNNPQSLKYHLLSMTDNLYCPGCSQRSDSVMALIQHLDRCGQTVDPEESNNEKEDSAQEIQHESETDTTVLMDTNVEGIDQSFLATVNDSGIMIVGGPQTIQVDENGEIKVVEKMDTEEAQLEQNSLEFKMTEKVPSTAKKDNNSLTQDHIVTISAAETEDKDGNKNIITILPEGSELLDGNTGALINMDHINDVGELDEDGLLHVKEELCELEPEAVYSCTSCDMSFNSVVEHIKQYHDGQEVLLEIADQLDDLPTVPVANTLPAESENVVNTRQRQSMNTLRTEECVDSEGRLYTRKVVQIERFWDRAPAQTSLQSTTKAPMIEKFFSNVEGVKVREKRLAAAPMRMYRCNQCLQQFSKLGNFRVHACLHGNNRCDSCDQTFATPKALQLHAKVHEGEPDPNQKTFVCETCGTEFCSHKSLRLHSRMHAPVRARHVDAPEGTPSATFTCPECGKTLAESYKEAHMALHTGDSVTCTVCNRKFDSADSLAMHAAVHTELSQSHSPTPPATETMTTEPTENQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYGCQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHGTDILAPPEPAREEEVHEGEDFLLAEEEVEDDELVIPSPLPVEQSSEAEDTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625657;
90% Identity: iTF_00226756;
80% Identity: -