Basic Information

Insect: Halictus rubicundus
Gene Symbol: -
Assembly: GCA_028454235.1
Location: CM052169.1:12180155-12183005[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 6.7 5.5e+02 1.3 0.2 1 20 363 382 363 386 0.77

2 10 0.0085 0.7 10.4 3.2 1 23 393 415 393 415 0.97

3 10 0.00067 0.054 13.9 4.0 1 20 421 440 421 443 0.96

4 10 1e-06 8.4e-05 22.8 1.5 1 23 449 471 449 471 0.98

5 10 9.7e-05 0.0079 16.5 2.3 1 23 477 499 477 499 0.97

6 10 3e-06 0.00025 21.3 0.7 1 23 510 532 510 532 0.98

7 10 2.3e-08 1.8e-06 28.0 0.3 1 23 538 560 538 560 0.99

8 10 7e-06 0.00057 20.1 0.6 1 23 566 588 566 588 0.95

9 10 9.3e-06 0.00076 19.8 0.1 1 23 594 616 594 616 0.93

10 10 4.3e-06 0.00035 20.8 0.2 3 23 624 644 622 644 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	6.7	5.5e+02	1.3	0.2	1	20	363	382	363	386	0.77
2	10	0.0085	0.7	10.4	3.2	1	23	393	415	393	415	0.97
3	10	0.00067	0.054	13.9	4.0	1	20	421	440	421	443	0.96
4	10	1e-06	8.4e-05	22.8	1.5	1	23	449	471	449	471	0.98
5	10	9.7e-05	0.0079	16.5	2.3	1	23	477	499	477	499	0.97
6	10	3e-06	0.00025	21.3	0.7	1	23	510	532	510	532	0.98
7	10	2.3e-08	1.8e-06	28.0	0.3	1	23	538	560	538	560	0.99
8	10	7e-06	0.00057	20.1	0.6	1	23	566	588	566	588	0.95
9	10	9.3e-06	0.00076	19.8	0.1	1	23	594	616	594	616	0.93
10	10	4.3e-06	0.00035	20.8	0.2	3	23	624	644	622	644	0.98

Sequence Information

Coding Sequence: ATGAGCTGGGAAATCAGCTGTGCAGATATGTGTCGTGCGTGCATGAAGGTCGACGGCGTTCTTCTCCCTATGTATGATGACGACACAATCAGCCAAAAAAATTTACCTGATAAACTTGCTGAACTGGCATCGATACAGATTGATAGGTTTGACGGGCTACCAAACATGTTGTGTGCGAAATGTGCATATCGCACGGATGCATTTTATGACTTTAAACTCCAGGTTCAAGCCACAGAGAAGAAACTTCGCAAGATGTTTGAAACACAAATGCATTGGACAATAAAGGAAGAGATAATAGGCAATGACGCTAATCAGGACTGTTCAGAACAAACAAATGAGTTACTGGAGGCAAAATCGTTAGACAATAAACAGGATACTAAGTCTATGAACACAGTAGTTCATTCAGAACAGTTTGTAGCTGATGAAATTGGTATGACTTGTAAAGAAGAACATATGTTAGAAATCGATGTGTGCCAGTTAGTGGAAGAAAGTGAGGAATTTAACAAGGCTGACTTGTCTGACTTAAGAAATATCCTTATTTCCAAATTACCAGCAACGCAAGTTGAGCAAGAAAAACACGTAAAGAGCGAGATACCAAATGAAATTTCAAAAATGCTTGAATCTCAGCATTTAGACTATACGATAATGTATATACCAGAGGAAGAGGTTTCTTTGGAACATATGAATGCCGAGAACGTAGTACCTTGTGAAACAGTAAGTACCATTAAATTAGGAGATGAAAAGAAAATTCTGGAAGGTGACTGCGATGACCAAATCTTTGACGATTCGCTGGACCACGAGGATTTTTTAGATACTGTCTATGTTGAAAACATTGAGGATACGCAGGTTCGTAAAAGAAGTCGAAACAAGCAATCTTCGGAATCCTCGATCCCAGAGAAGAGTTCGAGGGAAAAAGTAAACGGACAAAGCAAACAGAAGGTTTCGTTCGAATTAAAACCGCAAACGGAAGAGAGCGAAGACTCTGATTCTGATTATTTTGTTGACCCCAAAGATAATATATTGGGTAGTTTGAACGATACGATCACTAGAATAAAGGAGATCAAGCTCGAGGACAACACGATACAGTACCAATGCACATTGTGTTTACAAAATTACGATAAATTGACCGGTGTTTTGTTGCACACTATAGACAATCACGTACCAAGTAGTGGACCATTCTTTTGTGTGGTATGCGAGAAAGATTGCGAAAGTCATCGAGAATTGCGAGCACACGTGAAAACACATACAGGTCAGTTCCCGTACTCCTGTTTCATATGCAACAAAGCTTATACGATGAAGAGGTATCTGAAGAGGCACATGGTGTGTCACACGGATTTTCCGAGACATCGGTGTCCGAAGTGCGGTCTCCGATTCAAAGTGAAATCAGAGTTAGAGTCGCACATTTCGACGCATATACGTGGCGCACCTTATGCTTGCAGCCAATGTCCGCGATTGTTTAACCACAAGGGCAATTACAAACGACATTTGATCAGTCACTTGGACCCGCAAGGTCTTCACCTGCCTAAAtacccatgtaaagtttgtggcaagagattcctgaataatcgcacattggaaacacatatgcgtgttcataccggagaaaagccgttcaaatgcgatgtctgtggaaggtcgttctcgcagcaggggaatttattgaatcacgtgagaattcactcgaatccgcgaagttatacgtgcgaggtttgtgggaaacgattcaatcagagggcaacgttaagggatcatagtcttctgcatacaggagaaaaaccatacgtttgcaatgtatgcggaatcgcgtttaccttcagcgcagcattgagacgtcatatgtggactcacactggtggtaaaccgttcggatgtgaaatttgtgacgctcgtttcgtgggcaaatacgatttaaggcgacacatgaggatacacaccgataggcctaaagcgaaacGGAGAAAAAACACAATTAAAGTAAATGATGACGATGAAGAAAGAGGTAAAGAAGAGAGTATTGCTATTTCCGAGCATCCTGACACGGAAACGGTCTTAATCGAGCAGGTTTTTCTGACTCAAGATGTCACACAAGTCGTACGACAACAAGAATCCGAGAAAGAGAATGTCGACGCTCTTTTTAATCTTATACAGTACGGCTAA
Protein Sequence: MSWEISCADMCRACMKVDGVLLPMYDDDTISQKNLPDKLAELASIQIDRFDGLPNMLCAKCAYRTDAFYDFKLQVQATEKKLRKMFETQMHWTIKEEIIGNDANQDCSEQTNELLEAKSLDNKQDTKSMNTVVHSEQFVADEIGMTCKEEHMLEIDVCQLVEESEEFNKADLSDLRNILISKLPATQVEQEKHVKSEIPNEISKMLESQHLDYTIMYIPEEEVSLEHMNAENVVPCETVSTIKLGDEKKILEGDCDDQIFDDSLDHEDFLDTVYVENIEDTQVRKRSRNKQSSESSIPEKSSREKVNGQSKQKVSFELKPQTEESEDSDSDYFVDPKDNILGSLNDTITRIKEIKLEDNTIQYQCTLCLQNYDKLTGVLLHTIDNHVPSSGPFFCVVCEKDCESHRELRAHVKTHTGQFPYSCFICNKAYTMKRYLKRHMVCHTDFPRHRCPKCGLRFKVKSELESHISTHIRGAPYACSQCPRLFNHKGNYKRHLISHLDPQGLHLPKYPCKVCGKRFLNNRTLETHMRVHTGEKPFKCDVCGRSFSQQGNLLNHVRIHSNPRSYTCEVCGKRFNQRATLRDHSLLHTGEKPYVCNVCGIAFTFSAALRRHMWTHTGGKPFGCEICDARFVGKYDLRRHMRIHTDRPKAKRRKNTIKVNDDDEERGKEESIAISEHPDTETVLIEQVFLTQDVTQVVRQQESEKENVDALFNLIQYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00864128;
90% Identity: iTF_00860582;
80% Identity: -