Basic Information

Insect: Halictus rubicundus
Gene Symbol: Snai1
Assembly: GCA_028454235.1
Location: CM052186.1:10885362-10889077[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 6.1 5e+02 1.5 0.1 2 16 64 78 63 80 0.76

2 14 8 6.6e+02 1.1 0.0 1 23 203 230 203 230 0.78

3 14 0.0089 0.73 10.4 0.1 1 23 235 257 235 257 0.94

4 14 1.3e-05 0.0011 19.3 1.2 1 23 265 287 265 287 0.98

5 14 3.2e-06 0.00026 21.2 0.2 2 23 295 316 294 316 0.97

6 14 1.5e-06 0.00012 22.3 0.7 1 23 322 344 322 344 0.99

7 14 1.7e-05 0.0014 18.9 1.9 1 23 351 373 351 373 0.99

8 14 6.9e-06 0.00057 20.2 0.6 1 23 379 401 379 401 0.95

9 14 1.1e-05 0.00086 19.6 0.2 1 23 407 429 407 429 0.98

10 14 5.5e-07 4.5e-05 23.6 1.2 1 23 435 458 435 458 0.96

11 14 2.9e-06 0.00023 21.4 0.5 1 23 464 487 464 487 0.96

12 14 1.8e-06 0.00015 22.0 2.0 1 23 493 515 493 515 0.99

13 14 7e-05 0.0058 17.0 0.4 1 23 521 543 521 543 0.94

14 14 0.00022 0.018 15.4 0.1 1 23 549 573 549 573 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	6.1	5e+02	1.5	0.1	2	16	64	78	63	80	0.76
2	14	8	6.6e+02	1.1	0.0	1	23	203	230	203	230	0.78
3	14	0.0089	0.73	10.4	0.1	1	23	235	257	235	257	0.94
4	14	1.3e-05	0.0011	19.3	1.2	1	23	265	287	265	287	0.98
5	14	3.2e-06	0.00026	21.2	0.2	2	23	295	316	294	316	0.97
6	14	1.5e-06	0.00012	22.3	0.7	1	23	322	344	322	344	0.99
7	14	1.7e-05	0.0014	18.9	1.9	1	23	351	373	351	373	0.99
8	14	6.9e-06	0.00057	20.2	0.6	1	23	379	401	379	401	0.95
9	14	1.1e-05	0.00086	19.6	0.2	1	23	407	429	407	429	0.98
10	14	5.5e-07	4.5e-05	23.6	1.2	1	23	435	458	435	458	0.96
11	14	2.9e-06	0.00023	21.4	0.5	1	23	464	487	464	487	0.96
12	14	1.8e-06	0.00015	22.0	2.0	1	23	493	515	493	515	0.99
13	14	7e-05	0.0058	17.0	0.4	1	23	521	543	521	543	0.94
14	14	0.00022	0.018	15.4	0.1	1	23	549	573	549	573	0.94

Sequence Information

Coding Sequence: ATGACGGCTGATTCTGAGAAAGATAGCACCCACTGTTTAATATGTAACAGTAAAGTTGGTGTGTCTACTAGGAATAGCATACGTATCTTTAATGAAAACGCCTTTACATCGTCGGAGAAACCACTTGTAGATATCATTTGTGCTGTTCTAGAAACAGATCTTAATGAAGAAAATGTACACTCCCTTGTTGTATGTAAAAAATGCTACAAATTATTTAATGAGGTTGACGAATTGGAAAGTAGACTAACAGAAGTGAAATTAGAACTGTTCAATAACTATAAAAGAACTGTACAGAAAGTATCTGACATGCGAAATGAAGAAGACTATAACGACCATGATTATATAGAAAATACAGAAAGTCAAGACACGGAACTAAAATATACAGAGAAAGATGAACAAGAAATGGAAGAGATAGAAGGAGAGGAAGAAAGATTAGAAGAGGAGGAAGAAGAGGAGGAACCTCCTTGCGAAGCAGAAATTATACTTAACATTGAACCAATGCCTGAGACAAGTAATTCCGAAGAAAAGAAAAGGATGAAACGATCAAAAATTCCATCAAAACTTGATGCTACCCAGGAACAAATTATAAGTAGAGATGGTTCTACATATACTTGTTTGTTGTGTACAAATGAAGAAGACAAAGCCGTTGGAGATGCAAAATCTATAATTGCACACATGAAAAGTGTGCATGAAACTCGTTTATATATTTGTGATATATGCGGAGATGATTTCAAGAAGAGAACCGAACTATCTCTTCATCTTGATGATCACGTTGCCAAGGAAGATGGTGATTTTCAATGTGAAATATGCAATAGAATATTTAGTAATTTGCGTTTGTTCAGGATTCATAAACGGATACATTATCCACAAGTGAAGTCTTGGCCGTGCGAAACTTGTGGTAAAAGATACAGTTCTAAAAACTTGTTGGAAGAGCACATCAACACTCACACTGGTGTGCGACCATATGTGTGCGAGAATTGTGGCAAAGATTTTGCTTCCAAATATACGTACAAAGCACACGTAAAAACGCACGAAATTCGACCACGTCCTTACGAATGTTCACAATGTAATAAATCATTTTTAAGTCAGCAAAATCTTAATCAGCATGAAAGAACTCACAACGGTGTAAAAGAGTACATTTGTCACCAATGTGGAAAGGCTTTTGGCTCGCCACACAatttagaggtgcacaatatagtgcacacaggctacaagccttacatatgtagaatgtgtggtaaagcgtttgctcgcaaagctgaaataagagatcatgaaaggacacacactggagagaaaccgtaccaatgcgaattttgcggGGCTACATTTAGtcaaaggtcaaatttgcaatctcataaacgtgcaacgcactacaacgacaagagatacaaatgtgacgattgtggaaagggattcaaacgacgaagattgttggactatcacataaaagcagcgcatactggtgaaagaccgtacaaatgtgaagtttgtacggcgacgttcgtataccccgaacactttaaaaagcatatgcgcatacatacgggagagaaaccatacctatgtgaggtttgtggtaaagcatttaatagcagagataataggaacgcgcatcgattcatacacagtgataagaagccgtacgagtgtctagtatgcggtatgggcttcatgagaaaacccttgttgtatgctcacatgcaaactcagGGCCATCTAAACGATACTATTGTGGTTAATCAACCACGGCTCACTACTGAAGACGACCAAGTGATAACAATCCCTGAAGGTGATGTTGAGCTACTAATGGACGAACCTGAAAATGATCAGTTGGAAGAGGCTGAACTGTATGTGACTGAGTTAAAAGATCATGTTATCATACAACAACAGAATGAAGATCAAATATATAATGAAGAAGACGTATTAAACATTTCTGCGGAAGAAAATGTTGCGGACGAAGAAGTAGGTCATCTTGTTGATGGAGAGATGACTTTTGTCGAAAATGAAGGAATTGAGTGTAAAGAGGAAGATACAGAGCAAGTAGAAGAAGTGTACAATTATAACGAAAGCGAAGATGGAGAAACAATAGTTGTACCAACTACCTCAGAGTACAAAGATATGGGAGAGGACGACAAGAATGCGGTTCGATTAGTACAGATTCGATTCCCAACATCAGTCACAGCAGAAGGTCGAAGTTGGCTAAGTCTAGTACAAAATACATGA
Protein Sequence: MTADSEKDSTHCLICNSKVGVSTRNSIRIFNENAFTSSEKPLVDIICAVLETDLNEENVHSLVVCKKCYKLFNEVDELESRLTEVKLELFNNYKRTVQKVSDMRNEEDYNDHDYIENTESQDTELKYTEKDEQEMEEIEGEEERLEEEEEEEEPPCEAEIILNIEPMPETSNSEEKKRMKRSKIPSKLDATQEQIISRDGSTYTCLLCTNEEDKAVGDAKSIIAHMKSVHETRLYICDICGDDFKKRTELSLHLDDHVAKEDGDFQCEICNRIFSNLRLFRIHKRIHYPQVKSWPCETCGKRYSSKNLLEEHINTHTGVRPYVCENCGKDFASKYTYKAHVKTHEIRPRPYECSQCNKSFLSQQNLNQHERTHNGVKEYICHQCGKAFGSPHNLEVHNIVHTGYKPYICRMCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCEVCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTTEDDQVITIPEGDVELLMDEPENDQLEEAELYVTELKDHVIIQQQNEDQIYNEEDVLNISAEENVADEEVGHLVDGEMTFVENEGIECKEEDTEQVEEVYNYNESEDGETIVVPTTSEYKDMGEDDKNAVRLVQIRFPTSVTAEGRSWLSLVQNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00734079;
90% Identity: iTF_00864116;
80% Identity: -