Hqua011851.1
Basic Information
- Insect
- Halictus quadricinctus
- Gene Symbol
- nfxl1
- Assembly
- GCA_028454245.1
- Location
- CM052123.1:8958838-8961723[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.1 1e+04 -3.2 1.1 15 19 126 130 125 130 0.81 2 18 0.34 3.3e+03 -1.7 0.2 4 10 161 167 161 167 0.93 3 18 5.6e-08 0.00053 20.0 15.1 1 18 175 191 175 192 0.98 4 18 1.6e-07 0.0015 18.6 13.1 1 19 229 246 229 246 0.94 5 18 0.1 9.9e+02 -0.0 0.6 5 10 270 275 269 275 0.96 6 18 2e-05 0.19 11.9 9.6 1 18 281 299 281 300 0.92 7 18 6.5e-05 0.62 10.2 8.6 1 18 336 353 336 354 0.97 8 18 0.0029 28 4.9 7.4 1 12 388 399 388 399 0.94 9 18 1.9 1.8e+04 -4.0 1.3 6 10 409 413 409 413 0.96 10 18 2.1e-06 0.02 15.0 15.0 1 18 419 436 419 437 0.91 11 18 0.0001 0.99 9.6 9.8 9 19 485 495 483 495 0.90 12 18 0.0025 24 5.2 6.2 1 12 505 515 505 515 0.95 13 18 0.85 8.2e+03 -2.9 5.8 14 18 547 551 547 552 0.89 14 18 0.00037 3.6 7.8 8.3 1 12 588 599 578 599 0.91 15 18 0.61 5.8e+03 -2.5 1.0 6 10 615 619 614 619 0.88 16 18 0.0014 14 6.0 14.1 3 19 628 644 627 644 0.92 17 18 2 1.9e+04 -6.5 3.4 9 13 650 654 650 654 0.71 18 18 0.0004 3.8 7.7 9.3 1 16 689 703 689 709 0.88
Sequence Information
- Coding Sequence
- ATGCAGAAGTTCAGACGTGCCCAAGCACAAAATAAGATAGCAATTAACAAGCATTTAGAGGCAAATGCTTATTTAGAATCGTCGAGCGAGGACGAGGACGATATAAATACAGAAGACATACAAAATGTAGTTGGCAAAGTGTTGTCTGCCTATCAAGGAGGAGAGGTAGACACGGAAAAGACTTTATCTTACTTAGTTAATCTATTTCAATCTGGCAGCGCAGTGTGTTTAATATGTATTTCAACTGTAAAGAAAGCAGATGCGATCTGGAACTGCAGCAAGTGCTTCGCTTTTTTACATTTGTCCTGCATTCTGCATTGGATACGAGATAGCCTAAACGTAAAACGTGAGAAAGGTGTTGCTCCTATTTGGGCATGCCCAAAATGTCGTATGGACTATGGACAAGACGAAGTTCCTCGTAATTATAAATGCTTCTGTAAGAAAGTTATAGACCCTGCGTTCCAACCGTGGAGTATACCACATTCCTGTGGAGATATATGCGGCAAACTCTTGCAACCAGAGTGTGGTCACAAATGTGTTCTACTTTGCCACCCTGGGCCATGCCCACCATGCGCAAAAACAGTATCGATCAAATGCTTTTGTGGTAAACAGGCTCCTGAACAAAGAAGATGCAACGCCAAAGACTGGAGTTGTGGCACGGCGTGTAACAAAAAGTACAAATCATGTTCGCACAGCTGCGTGCAACTATGCCACACAGGAGATTGCCCTCCTTGCTCGGAGTCGTTGCTACTCGAATGTCGCTGTAAGAGCAGCACAGAAATAAGGCAATGTTCCGAAGGTGCGTGGACTTGCGAGAAACCTTGTCGCCGGCCTTTGTCCTGCAACGTTCATGTTTGCCAGAGCACGTGCCATTTGCTCGGAGACTGTGGTCCGTGCGCTTTGGAAAAGAATAGAACATGTCCCTGCGGCAAGAAGCGTTACGCGGTTTCTTGCAGCCAGGAACAGTTGCCCACGTGCGGAGACACGTGCGGCAAGCTGCTGGATTGCGGTTCACATTATTGCAACATGAGATGTCACATGGATCAATGCGGACAATGTTTGGAAGTAGTAACAAAGTCCTGTCGATGCGGTAGCTATAAGAAAGAAGTCGCCTGCGGCAAAGAGTTCCATTGCAACAAGAAATGTATGCAGATGCGCCTCTGCGGCAGGCACATGTGCAACAAAAAATGTTGCGATTGCTTGATCAAGAACACGTTCAACGTGTGCGAGAAAATTTGCGAGAACACTTTAAATTGTCGCAAGCACAAATGCTCGGGCCCGTGTCACAGTGGTCCATGTTATCCTTGCGAACGTACGGATATTATCCAATGCAGATGCGGATACAACAAAATAACGGTACCGTGCGGTACTACGAAGAGGGTAAAGCCACCGCCCTGTAACAAATCGTGCAAGGTGCCGCCGATCTGCCATCACCCTAAAAGGGAAACGCATAAATGCCACCAGGGTCCGTGTCCACCCTGCAAAAAGGTTTGCGATTTAGTGTACAAACGATGCGGACATTCTTGCGTTGCTGTTTGCCACACGAAAGTTTGGGTGAAAGTGAACAAAAATGACGTGAAAGCGAATCCTGCAGGACCGTGGGAGATACAGAAAGAAACGAAGCAGCTGAAAACGTTACCGTGTCCGCCGTGCGAGGTCTCGGTACAGGTCACATGTTTGGGAGGACACGAAACACGTCCGTGGCCTTGTCACATAGCACGGCCTACGTCTTGCGGAAGACTTTGCGGGAAAATGTTGCCCTGCACCAATCATACTTGTGAGCTAGTTTGCCACAAGGTATTATCCGCAGAGGATATCAAAAATGCTACTCCGTGTATGGATTGCGAGAAACCGTGCGAGTTCCCGCGTCCACAAGGTTGCACGCATTCCTGTCCAAAGTCGTGCCACGCAGCACCATGTAACCCTTGCAAGCAGCTTGTTAAAATTCCGTGTCATTGCGGTATAGTCACTTTGTACAGAAGATGCGCCGAGTTGACATCGGCCACCGCAGAACAACGCAACGACCTTCTCAAATGTGGAAATCAGTGCCCTAAAAATTATCCATGCGGTCACCGATGTATGTATGATTGCCATCCCGGCGTATGCAAAAACGAGAATGAATGCAATAAGAAGGTGAAGTTATTCTGTCCGTGTAAACGTATCAAGAAGGATTTTGCATGCTCGCTGGTACAAAAGGAACGAATTCGATTACAATGTGATGATGTTTGTAAGAAGTTGAAGATGGAGAAGAGTCTAGCGGAAGCAGCTTTGCTAGAACAAAAACGACAGGCAGAAGAAATACGTAATCAAGAAGAGATCGAGAAATTCGAGAGGAAATTCAAGCCACGTCGCAAAGGAAGGGACAAGTTCGATAAGAAACAATCTCGGATAGAAACGAATAGTCACTATTGGAAATATTGGATTTTAGCGATTTTATTGTGTACAGTAGGTATAGCGATATATTACGTGAACGTTCAAAGAACGTGA
- Protein Sequence
- MQKFRRAQAQNKIAINKHLEANAYLESSSEDEDDINTEDIQNVVGKVLSAYQGGEVDTEKTLSYLVNLFQSGSAVCLICISTVKKADAIWNCSKCFAFLHLSCILHWIRDSLNVKREKGVAPIWACPKCRMDYGQDEVPRNYKCFCKKVIDPAFQPWSIPHSCGDICGKLLQPECGHKCVLLCHPGPCPPCAKTVSIKCFCGKQAPEQRRCNAKDWSCGTACNKKYKSCSHSCVQLCHTGDCPPCSESLLLECRCKSSTEIRQCSEGAWTCEKPCRRPLSCNVHVCQSTCHLLGDCGPCALEKNRTCPCGKKRYAVSCSQEQLPTCGDTCGKLLDCGSHYCNMRCHMDQCGQCLEVVTKSCRCGSYKKEVACGKEFHCNKKCMQMRLCGRHMCNKKCCDCLIKNTFNVCEKICENTLNCRKHKCSGPCHSGPCYPCERTDIIQCRCGYNKITVPCGTTKRVKPPPCNKSCKVPPICHHPKRETHKCHQGPCPPCKKVCDLVYKRCGHSCVAVCHTKVWVKVNKNDVKANPAGPWEIQKETKQLKTLPCPPCEVSVQVTCLGGHETRPWPCHIARPTSCGRLCGKMLPCTNHTCELVCHKVLSAEDIKNATPCMDCEKPCEFPRPQGCTHSCPKSCHAAPCNPCKQLVKIPCHCGIVTLYRRCAELTSATAEQRNDLLKCGNQCPKNYPCGHRCMYDCHPGVCKNENECNKKVKLFCPCKRIKKDFACSLVQKERIRLQCDDVCKKLKMEKSLAEAALLEQKRQAEEIRNQEEIEKFERKFKPRRKGRDKFDKKQSRIETNSHYWKYWILAILLCTVGIAIYYVNVQRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00865697;
- 90% Identity
- iTF_00183647;
- 80% Identity
- -