Basic Information

Insect: Halictus quadricinctus
Gene Symbol: -
Assembly: GCA_028454245.1
Location: CM052116.1:648469-653861[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.11 8.9 7.1 0.5 2 23 157 179 156 179 0.92

2 19 0.25 20 6.0 0.1 3 19 186 202 185 204 0.92

3 19 0.033 2.6 8.7 7.5 1 23 222 245 222 245 0.94

4 19 5.3e-05 0.0043 17.5 2.7 1 23 622 645 622 645 0.96

5 19 0.013 1 10.1 0.9 2 23 678 699 677 699 0.94

6 19 0.054 4.4 8.1 1.7 1 22 836 857 836 857 0.95

7 19 0.001 0.082 13.5 1.1 1 23 864 887 864 887 0.91

8 19 3.9 3.1e+02 2.2 3.1 1 22 897 918 897 920 0.89

9 19 0.94 76 4.2 0.1 2 19 943 960 942 963 0.90

10 19 0.4 33 5.3 4.0 1 23 970 993 970 993 0.90

11 19 0.14 12 6.7 4.0 1 23 1004 1027 1004 1027 0.88

12 19 0.6 48 4.8 0.0 1 20 1060 1079 1060 1081 0.94

13 19 0.17 14 6.5 0.3 1 19 1173 1191 1173 1193 0.93

14 19 0.0096 0.78 10.4 2.2 1 23 1201 1223 1201 1223 0.97

15 19 0.016 1.3 9.8 2.0 1 23 1233 1256 1233 1256 0.93

16 19 0.06 4.9 7.9 0.1 2 20 1296 1314 1295 1316 0.93

17 19 0.00045 0.036 14.6 3.2 1 23 1323 1345 1323 1345 0.97

18 19 2.1 1.7e+02 3.0 0.4 1 23 1472 1495 1472 1495 0.90

19 19 0.00033 0.026 15.0 0.2 2 23 1516 1538 1515 1538 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.11	8.9	7.1	0.5	2	23	157	179	156	179	0.92
2	19	0.25	20	6.0	0.1	3	19	186	202	185	204	0.92
3	19	0.033	2.6	8.7	7.5	1	23	222	245	222	245	0.94
4	19	5.3e-05	0.0043	17.5	2.7	1	23	622	645	622	645	0.96
5	19	0.013	1	10.1	0.9	2	23	678	699	677	699	0.94
6	19	0.054	4.4	8.1	1.7	1	22	836	857	836	857	0.95
7	19	0.001	0.082	13.5	1.1	1	23	864	887	864	887	0.91
8	19	3.9	3.1e+02	2.2	3.1	1	22	897	918	897	920	0.89
9	19	0.94	76	4.2	0.1	2	19	943	960	942	963	0.90
10	19	0.4	33	5.3	4.0	1	23	970	993	970	993	0.90
11	19	0.14	12	6.7	4.0	1	23	1004	1027	1004	1027	0.88
12	19	0.6	48	4.8	0.0	1	20	1060	1079	1060	1081	0.94
13	19	0.17	14	6.5	0.3	1	19	1173	1191	1173	1193	0.93
14	19	0.0096	0.78	10.4	2.2	1	23	1201	1223	1201	1223	0.97
15	19	0.016	1.3	9.8	2.0	1	23	1233	1256	1233	1256	0.93
16	19	0.06	4.9	7.9	0.1	2	20	1296	1314	1295	1316	0.93
17	19	0.00045	0.036	14.6	3.2	1	23	1323	1345	1323	1345	0.97
18	19	2.1	1.7e+02	3.0	0.4	1	23	1472	1495	1472	1495	0.90
19	19	0.00033	0.026	15.0	0.2	2	23	1516	1538	1515	1538	0.93

Sequence Information

Coding Sequence: ATGCTTGGAAAATTGGTAGGATATACGGGAAGTTTGGATGTAGCTGTTCGCATCGCCAACGCTTACATTCTAACGGTTACAATAGCGCCTAGGCCTCTTACTGGAGTACTGGTGAAAGAAGAGCCACGTGACACAGATGACAATAGTCAGGGAAGTACTTTGCCATTGGCAAATACTAATGTAAATACTACCACACCGGCTGAAACGACCGTTGAAGGGACACAATTGGTGCACGATGTAAATAACAAAGAGAATAAGCTTGTATCTTCTACGAATCGTGCCAATGAAGACAAATCGGTCACGAACGTAGTCAATACGAAAAAACGTAAACGTTTAATATTTGAGAATTTGAAAAAGCCGGAAACGGTGCCCGAGCCAGTGTCACAACTACATAAAAGGGCCTGCCGTAGTAGCCTTGAACGTAAATCTTTGGTATCAGCAAGCAAAGAAGGAGAAAGTGAGGAAGTGGAATGCGGTGTGTGTTACTTAAAGTTTCGAACAGAGAGATCCTATAAGATCCATAGAGACTATTATCATGAGATAGCCGATCGTATCTGTGATAAATGCCAAATGTCATTTCGATCGATTGGCGCGTTAGATGCTCATAAATTTCTAGATAAATGCAAGACAAAACCACATGGGAAATCGAAAAACGATAGGAGATATTCCTGTTGTTTCTGTAATCGGAAGTTTTCGAAGAAACCATATTTACAGAGTCACATGTTTCACATTCATATTGACTTGTTACCGAATATAAGTGAACCCGCTAAGGCCAATGAAACTGATAAAAACAATGAACCTAATAAAAACAATGAAACTGATAAACACAATGAAGCTGATAAAATCAAAGAAACCGATAAAGTCAATGATACCGATAAAATCAGTGAACCGCCATTGACACAGAGCATTGACGGTCACGTAGGAGGTCCTTCTGCACAGCAGAAAGAAAAGAACTCAGCCGAGAGTCCTTCCAAAAGAATGAGACAAACGACTATGATAGAGTTCCTTTCAGGATTCACGAAAAAAGAACCCGTTTCTCCGAAAAAGGTTGACCTTATAAGAGAAAGCCCGAGAAAAGGAAGAGCTACACAAAATGGAAAAATAACGGAAAAATTCAATGTTCCCGGGGAGACTCCGAAAAAAGTAACACCTAAACAAAATGGAACAATAATAGAAAAATTCGATCTCCAGGCAGAAACTCCGAAAAAGGTTAGACAAAACGGAGCAGTAGCAAAATTCATTTCCACTTCTTGTAATGAGAAAACGCCAACTACTGGTAAAAGTTCTGGGTTAAGTACCAAAACTGGTAAGGAGAAAAAACCATTTGTCGAGATCTATATGGATTCCGACGAGATGGTGGCCTTATTGGATAAACCAATTAAAGTCGAAGTAGAAGATGAATGTAGCGATTCTACGCCACAGAATGGACCGTACAACCTTAGACGCGCCACAAGACATGGTATTGATATAACGTCGCGTAACGTGAAACCGCCACGTATTTTTAAAGCTAATAGAAGACGTAACTCTAGAGGGCAGTTCATTACCATATGTAAAGACAAATCGAAGGCGTGGTCGAAGGAGGAGCGACTGAGGGCCAAGTTCAAATGTAAAGACTGCAAAGTTAATCTAGTTAGATGCGACATGGTGGTCAAAACAGAAATGGTCGATTATGTCCCTCCAACTACGGTAGATGTAGAGGAAGATATCGAGGAGGTTTGGAGAAAAAAGATTAACTTAAAGAGAATCCACGTTCCATTAATCAGACTGAACAACTCGATAAAGGTAGAAGTTAACGATACGTTCCATAATCCAAAGAAGCCCAGTACATCTAAGGCTAACATCAAAGCTAACTTGCGTAAGATATTCCGGTGCAAAATCTGCAGGAAATACTTCTCCACGAAGCAGAATTTATACAACCATTTGGAAGTTACTCACGTGTTCTACATATCGAGCGTGTGCAGCGCTTGGTACAAATCCCGAGCCAGATTGCTCAGACACTACTTACACCAGCACGGCGTTTTGAAGCGCATGGAGTGTTGCGTATGCTTCGAGAAATTCTCGTTGCCTGTGTTGTTGAAGCGGCACATGGGTCTGCACTGCATCAAGGTGCTGCAATCGAAGCGCGACAAGCTATTCTACAAAGAGGCGGTCAGCTGTAATGTACAATCTAGGACGAACTTATGCGAGGCGTGCGGTAAGCACTTTTGGTTGGGGGCTTGCTTGAGCGAGCACCAACAAGTGTGTCATAAGATGAAGGCGCAATTAAAGAAATCACAGAACGCGCAGAATTCCGTGAAAACGTCGCCAACGAAACAAACGCTTCAGCCACCGTTGGCTGTTGAAAGCGTTACAGTGAAGGAGCAGCACCCCAAGGCGTTATCCCCGGTTAAAGATCATCCTCGTAGAGCAGTATCATCGCCAGTAACACAACCGAAAAGATTGCTGAAGGGCGTCGCGTTCGCGAAGGGGTACAACATCGACGCTACCGGCTCGGGCAAAGAGAAGTTCTCCTGCACCACTTGCGGCGCGCAATTCCAGAATTTCCAGAATTTATGTTTGCACGGACGAACCTACTCTCAAGCCGCTACACACGTCTGCGAGAGCTGCAATACCGCCTTCACCACACAGAAATTATTGCAGAACCACGTGACAGCCACCCACATGCTCGACACTTTAAAGAACTACAAGTATTTCTGTACGTTCTGCACACAAGGCTTTCTAAAGAAGGTTAATCTTCAGATCCATACGGGACACTTCCATGGTGGTCAAACTCCCATCATTCCCAAACCGTGGTTGGATACTACTTCCAATTGGGAGGTGAACACTGTGTGCAACGTGTGTAATCTGATATTCGAATCCAGCGAACGGTTCATCGAGCACAATATGTATTACTACAAGGGACAGATGTTTACCTGCACGTTCTGTAACCAGACCTTCCAGGGAATGTACATGCTGAACCATCACAACAAGTTCGTACACTACACGGAGGACATGACGAAACAGTACACGTATACGTGCAACATCTGCAACGAGGGCTTTACCCAAGAGTCCCAGCACCACGCGCATAAATTACACGTTCATTCGAAAGTGCCCGAAGTCAACACGCGGTCCCTGCAAGATCATACCTACGCCATCAAGGTTGGGAACGGGGGATCGAGGAACGGGCCGACAACGAGATACAACTGTGAGGTTTGTTACATGAACTTTATGGTCGAGGAGGACCTACGGCAGCACGAGTTGGAGTACTCCAACAATGGCGATTACCTATGCAGCTACTGCGCCAGAAGATGCCCTACGGACAGCATTCTCAGTAAGCACGAGAGTTTGTCGCACACCTGTCGCAACTTCACTGACTGCTACAAGTGTCGCTACTGCGAGGAGGTGCTTTCCACATGTACAGCGTTGAAATGCCACGAAGTACACTTCCACCAGAAGATCTCTAACCCTCCGATCAACAGCGATAATCAGCCAATCGTGGACCAGAGTTTAATACCACTAGGAAACGTTGGGACCCCATTCGCCTGCTCGATTTGTGGCATGAAGTTCCTAACCTTAGAGAAATTGAACCATCATAACTTAGAATACTCGAACGTCGGTCTGTACAATTGCCACATCTGCAGTCGGAGGTTCCCGGAGTTATATCGCCTGGAAGTCCACAAGCTGAAGCACTCGAACTTGAATTACATACTGTCTAAGCATCACTGCCCCATATGTCGCGAGGGATTCGCAAATCCAGTCAATGTCCGGACGCACGTGTTGCACTTCCACCAGAACGAATTGTCCGAGCCTTGGATAACGAAGGACACGCAGACCTCACAGGCAGTCAACCACAAAGTCGCGATACCCAAGGTGGCCTCAAACAGCCTGTCGACGATGAAGTCGACCAAGTGTCGCGAATGTTTGGTGTCGTACGATTCCGAGAGTGCTTTAAAAAGGCACCTAGCACGCTTCGCGAACAAAGGACAACACGTCTGCGAGCACTGCGGCAGGAGGTTCCCGTTGTTGAAGCTGTTGAAGGAACACTTGAAGAGGCATGCCACCGGCGTTCAGCACATGAAGTATGCGTGTCCCGAATGCGACGATAGACTTGGTACTCCAGTGGCCAGATATCAGCATATCGTTCATCTTCACGGGAAGAGTAAGTGGATAGGCGACCTACCCCTTTCCATAAAGATTCGGTACAATGCTGAAATTTTAAACAATGGGGATTCCGATCTATTATTTCTTAGATCAGACACTCCAACAGATCAGCTGATTTACGCTGGTGAACCTATTGCTGCAGCCAGTCTCATGAATGCATTAAGCGATGGTCAGGAAAAATCCTCATCAATAATTGGTCATCAGGCGGATACGACTGTAGCGGTAGCTCAGCAAGAGACACCGCTTCAAAATTTAGAAGTGGAGACTCCGTACTACACTTGCCCCCTGTGCAACTTCAAGATCCAAATGCTGGAGACATTTGTGTCGCATTTGAAACTGGAGCACGGGATGATGATCCAGGGGACCATGTCCAACGTGTCCCAGTCTTTGACAGGACGCGTCATCAGCTGCTTGACCTGCGGGGTCACCTTCACTACGGAAGACGATCTTAAGATACATCTGAAGGACACGCATGTGAGGATTTGCCCTGCCAATACGGAAGACGCCGCCGGTTCTGTGGAGAACGACAAAGACGTCGTACACACCGTTTGGGAGAAGAAGCCGGACGCTTCCCAACAGTTAGGGGACCAGGGCGACTCGGATGTTCATGTTATGTGTTGGAGTTACCGCGCCCCGATCATGAACTGTGACAAAACTGTTGCGAAGCCGGCATCAGTGAATTCGAGTGCTGATGGTACCACTTTGAGGATCAAAGACTTTGCCAAATTGATTTAA
Protein Sequence: MLGKLVGYTGSLDVAVRIANAYILTVTIAPRPLTGVLVKEEPRDTDDNSQGSTLPLANTNVNTTTPAETTVEGTQLVHDVNNKENKLVSSTNRANEDKSVTNVVNTKKRKRLIFENLKKPETVPEPVSQLHKRACRSSLERKSLVSASKEGESEEVECGVCYLKFRTERSYKIHRDYYHEIADRICDKCQMSFRSIGALDAHKFLDKCKTKPHGKSKNDRRYSCCFCNRKFSKKPYLQSHMFHIHIDLLPNISEPAKANETDKNNEPNKNNETDKHNEADKIKETDKVNDTDKISEPPLTQSIDGHVGGPSAQQKEKNSAESPSKRMRQTTMIEFLSGFTKKEPVSPKKVDLIRESPRKGRATQNGKITEKFNVPGETPKKVTPKQNGTIIEKFDLQAETPKKVRQNGAVAKFISTSCNEKTPTTGKSSGLSTKTGKEKKPFVEIYMDSDEMVALLDKPIKVEVEDECSDSTPQNGPYNLRRATRHGIDITSRNVKPPRIFKANRRRNSRGQFITICKDKSKAWSKEERLRAKFKCKDCKVNLVRCDMVVKTEMVDYVPPTTVDVEEDIEEVWRKKINLKRIHVPLIRLNNSIKVEVNDTFHNPKKPSTSKANIKANLRKIFRCKICRKYFSTKQNLYNHLEVTHVFYISSVCSAWYKSRARLLRHYLHQHGVLKRMECCVCFEKFSLPVLLKRHMGLHCIKVLQSKRDKLFYKEAVSCNVQSRTNLCEACGKHFWLGACLSEHQQVCHKMKAQLKKSQNAQNSVKTSPTKQTLQPPLAVESVTVKEQHPKALSPVKDHPRRAVSSPVTQPKRLLKGVAFAKGYNIDATGSGKEKFSCTTCGAQFQNFQNLCLHGRTYSQAATHVCESCNTAFTTQKLLQNHVTATHMLDTLKNYKYFCTFCTQGFLKKVNLQIHTGHFHGGQTPIIPKPWLDTTSNWEVNTVCNVCNLIFESSERFIEHNMYYYKGQMFTCTFCNQTFQGMYMLNHHNKFVHYTEDMTKQYTYTCNICNEGFTQESQHHAHKLHVHSKVPEVNTRSLQDHTYAIKVGNGGSRNGPTTRYNCEVCYMNFMVEEDLRQHELEYSNNGDYLCSYCARRCPTDSILSKHESLSHTCRNFTDCYKCRYCEEVLSTCTALKCHEVHFHQKISNPPINSDNQPIVDQSLIPLGNVGTPFACSICGMKFLTLEKLNHHNLEYSNVGLYNCHICSRRFPELYRLEVHKLKHSNLNYILSKHHCPICREGFANPVNVRTHVLHFHQNELSEPWITKDTQTSQAVNHKVAIPKVASNSLSTMKSTKCRECLVSYDSESALKRHLARFANKGQHVCEHCGRRFPLLKLLKEHLKRHATGVQHMKYACPECDDRLGTPVARYQHIVHLHGKSKWIGDLPLSIKIRYNAEILNNGDSDLLFLRSDTPTDQLIYAGEPIAAASLMNALSDGQEKSSSIIGHQADTTVAVAQQETPLQNLEVETPYYTCPLCNFKIQMLETFVSHLKLEHGMMIQGTMSNVSQSLTGRVISCLTCGVTFTTEDDLKIHLKDTHVRICPANTEDAAGSVENDKDVVHTVWEKKPDASQQLGDQGDSDVHVMCWSYRAPIMNCDKTVAKPASVNSSADGTTLRIKDFAKLI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -