Basic Information

Insect: Halictus quadricinctus
Gene Symbol: -
Assembly: GCA_028454245.1
Location: CM052126.1:3781671-3785057[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.024 1.9 9.2 0.1 2 20 105 123 104 124 0.94

2 13 0.01 0.82 10.3 4.6 2 23 250 272 250 272 0.91

3 13 0.0005 0.04 14.5 1.8 3 23 317 338 316 338 0.96

4 13 5.7 4.6e+02 1.7 7.6 3 23 426 447 425 447 0.95

5 13 0.065 5.3 7.8 2.3 1 23 496 519 496 519 0.94

6 13 0.026 2.1 9.0 3.7 2 23 567 589 566 589 0.94

7 13 0.00011 0.0087 16.6 0.1 3 23 614 635 613 635 0.93

8 13 0.0074 0.6 10.8 3.6 2 23 675 697 674 697 0.96

9 13 0.1 8.1 7.2 4.2 3 23 712 733 710 733 0.92

10 13 9.5e-05 0.0077 16.7 0.1 2 23 777 799 777 799 0.94

11 13 0.047 3.8 8.3 1.6 1 23 877 899 877 899 0.98

12 13 0.017 1.3 9.7 0.6 2 23 914 936 913 936 0.93

13 13 0.0066 0.53 10.9 0.8 1 23 1010 1033 1010 1033 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.024	1.9	9.2	0.1	2	20	105	123	104	124	0.94
2	13	0.01	0.82	10.3	4.6	2	23	250	272	250	272	0.91
3	13	0.0005	0.04	14.5	1.8	3	23	317	338	316	338	0.96
4	13	5.7	4.6e+02	1.7	7.6	3	23	426	447	425	447	0.95
5	13	0.065	5.3	7.8	2.3	1	23	496	519	496	519	0.94
6	13	0.026	2.1	9.0	3.7	2	23	567	589	566	589	0.94
7	13	0.00011	0.0087	16.6	0.1	3	23	614	635	613	635	0.93
8	13	0.0074	0.6	10.8	3.6	2	23	675	697	674	697	0.96
9	13	0.1	8.1	7.2	4.2	3	23	712	733	710	733	0.92
10	13	9.5e-05	0.0077	16.7	0.1	2	23	777	799	777	799	0.94
11	13	0.047	3.8	8.3	1.6	1	23	877	899	877	899	0.98
12	13	0.017	1.3	9.7	0.6	2	23	914	936	913	936	0.93
13	13	0.0066	0.53	10.9	0.8	1	23	1010	1033	1010	1033	0.98

Sequence Information

Coding Sequence: ATGTCCTCGACGATGGCGCACGAATCGACGATATCGGACCTGACGGAGTTGGACAGCGACGGGTCGAGCTGCGGGGAGCGGGGCGACGCGAGGAAACGTCTCCGCGTCGACGTCGACTCGACGGGGCCGAAGAAGAGGCGGAAACAAACGACGCCCGTAAGATTCTCGTCGACGCTGACGAGCGGCGTGCACGAGGAGTCGAACGAGGACGAAGAGGAGGACGAGGGCAGCGAAGGTAAGCTGTCGACGCAGTCACCCATACCGAGCCAGTCGTCGACGCGCGGCGACGACAACAACCCGGGTAACGAGCTCCGCTGCCAGTATTGTAGTCAGTTTTTCGAGGGCAAGGCCGCGTTGAACGCGCACCTCGATTGCGAGCACGGGTCCGCGCCTCCGAATCGAATCGGCTCGCCGATCGGCGCGATCAAAGCGGAACCGGCGCCGCATCAACCGGACCAATCCGAGAACCCCGTGAATCTGCTCAGCGTGAAGAGCTTCGCGACTAATTGGCTAGGCGCGTCCGGGCAGCACGTGCAATCGCAGATGCAGACGACGGCTAACGAGGAACTATGGCCGGGTCCTGTGAATCAGCTCACCGCGTTGCCGAACCATTTGCAAAGCCTGCCGGGATTTCCCGGCGCGTTGGCGCAGTATCTACCTTTGCCCGCGTTCCCGCTAACCGATTCCAGCCACATCGTCCGGCCGCCGATGGGACAGACCCCGATGAGGATCTTCAATCCGGACGCGTACTGCGACCTCTGCAACAAAGAGTTCTGCAACAAGTATTTCCTGAAGACGCACAAGGCGAACAAGCACGGGATCTACGTCGACTCGCCCGGTCCCAGCACCGCGGACAACAATCTCGCCGGATCCCTCTATCCCTCGAACTTTCCCAACAGCATGATCAAACTGGAACCGCCGGCTACCCCACCCACGCCGAGCGTCGCTTGCGATCTCTGCCAGAAACGCTTCAAGAACGAGGATTCGATGCGCAAGCACAGGCTGAAGATGCACACCGAGTTGTCGCAGGATCAGTCGCAGGATGCTCAGCCGGCGATCCTGTTCCCGCAGAACGAGGAGGACAGGGAGACCCCGAGGGACAGTCCGGGCGGCATGGAGACCCTCTTCAAGCAAGAGTACGGGGTCGAGCAGGAGGACGCGACGTTCATGCCGGCGCCCAGACACCTATCGCCTCAATCGATTCAGCAGGCGAGGGACGCCGGGTTCAACGCCGATCGGCTCCGTCGTTTGGGGGTCATCAATCCGGAGGCGTTCTGCGAGATATGCTGCAAAGAGTACTGCAACAAGTATTTCCTGCGCACGCATAAGATGAAGAGGCACGGGATCTCCGTGCAGGAGAACGAGAAGTCGCCGAGCAACCCAGGATCCGCGGCAACCTGGCACCAGGTCCAGACCAGCCCTTTGAACCTGATCGTGGCGGAGAGCGCGTGCAGCACCGAGTCGAACGAACGCGCCGGTGAGGACTACGAGTGCAAGACCTGCGACATACGGTTTCAGACGGTCGGACTGTACCAGGCGCACTGCCGGAAGATGCACGAGAGCGAGGAACAACAGTCGCCGAAGCTGGAGACCGAACTGGACCAGACGGATCAGCGCAACGACTCGATCTCCGAGGATCTTCAGAAGCTGCAGACGATGCTGCTGCAGCTGAACGGGCTGAAGTCGGGCAAGGGACTGTGCTGCGCCGTGTGTGGAAAAGATTGCGATAATAGAACAACCTTGCACATTCACATGGTGACGGAGCACGGCGCCATCGGGGAGGACTCTGGATCCTCGCCGCAGGACAAGTCGCCCTTGACCACTGGAACCTCCTCGTTCTGCAGCTTGTGCGGCAAAGAGTACCCGAGCCAAGACGCTCTCCGGAGACACATCGCCGAGGAACATCAACCGGCGATCTCCACTTCCGTTCCGCACACGCCCACGACCACGGCCACGGTGACCAATTCCACCCCGACGACGCCGAGCGAGAAGAAGGTGATGTCGATGACGCCGACGTCCAGCTACTGCGAGATCTGTAACAAGGAGCTCTGCAACAAGTACTTCATGAAGACGCACATGCAGCGGATGCACGGCATCGAGATCGAGAACGGGGCCCAGATCGGCGGCGTGATCTGCAACATCTGCAACAAAGAGCTCTGCAGCAAGTACTTCCTGCGGGTGCACAAGCACAACACCCACGGCATCGTCGACGAGAACACGCCGAGCTCGACGAAGCAGGAGGCTCACGAGCCGGCGAACACCGACGACGCCCTGAAGCCGGAACAACTGGGCGATCTCAGTCACAGATACTTCACTCATTTCACCGAGGTCTGTCCGATCTGCAACCGAAGGTTCCGCAGCATCAAGTGGCTGAAGGCGCACCTGATGGGCGACCACGGGAAAATGGGCGTGGACAAGTGGCGCGAGATGGAACAGCAATACCAAGCGACCAAACCCGGGAACCGTGGGTCGAACGCCGCGAAGAACGTCCCGAACTCGAACCTGAAGATACCGAACGGATTCGACGTTCCGCAACAGATCAAGTCGGCCGAGTACGCTGCCGGCCTGGGCAATCAGGTGCTGTCGAATCTGCTGGGATCGTCCTCGGAGGATCAGCAGCTGAAGAGCTACCGTTGCTCCTATTGCAACTTCACTACCACCGTGTTGCCGTTCCTGTTCCTGCACGAGCGGTCTCACGTGAACGCGCAGGAGGCCTCCGCGGACGGCGAGAAACCGCTCCAGTGTCCGATCTGCTCGCAGGGCTTTCACCAACCGGAGGTGTTGCATCAGCATCTGCTCGCGACGCACCAGTTCCCCGCGCTGCTCTCTCACTTTCAGCCCCCGGTGCTGAACAACATGGACCCGGAGAAGCTGACCGAGGTCAAGGAGAAGTTCGACCAGGAGACGAAGGACGATCGCGCGGGGAACAGTCCGCAAGTCACTGCCAATCAAACGATCCCCGAGTCGGTCCGGGGTCAACGACAGGAGGACACGAGCACCGCGGTCCAGGTGACTCCTCAGGGTGTGTACAAGTGCGCGCAGTGCGGCTACGCGACGACCAATCTGAACCGGATCAAGAAACACGTCAGGAAGGATCACAAAACGATCGGCGATCCCACCGATAGCGTGCTCGCCGAGCTGAGCAGAACCCTGAAGGACGTCGCGAACCGGCACAAGATGCCGGCCTGCTACGCGATGCCGCAGGACATGAACTCGAACCCGGACAAAACGATCATGCAGCCGTTTCTGATCGAGGAACAGGAGATCGCGCAGACCGGCGAGGAGTCCGGCACCGAGAAACGATTCGCACAGGCCCTGGTTTATTTACCGGTGAAATCGCGGATCGGCAATACCGTCACCGCCTCGTTTACACTGAGCCCCGCTTGA
Protein Sequence: MSSTMAHESTISDLTELDSDGSSCGERGDARKRLRVDVDSTGPKKRRKQTTPVRFSSTLTSGVHEESNEDEEEDEGSEGKLSTQSPIPSQSSTRGDDNNPGNELRCQYCSQFFEGKAALNAHLDCEHGSAPPNRIGSPIGAIKAEPAPHQPDQSENPVNLLSVKSFATNWLGASGQHVQSQMQTTANEELWPGPVNQLTALPNHLQSLPGFPGALAQYLPLPAFPLTDSSHIVRPPMGQTPMRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDSPGPSTADNNLAGSLYPSNFPNSMIKLEPPATPPTPSVACDLCQKRFKNEDSMRKHRLKMHTELSQDQSQDAQPAILFPQNEEDRETPRDSPGGMETLFKQEYGVEQEDATFMPAPRHLSPQSIQQARDAGFNADRLRRLGVINPEAFCEICCKEYCNKYFLRTHKMKRHGISVQENEKSPSNPGSAATWHQVQTSPLNLIVAESACSTESNERAGEDYECKTCDIRFQTVGLYQAHCRKMHESEEQQSPKLETELDQTDQRNDSISEDLQKLQTMLLQLNGLKSGKGLCCAVCGKDCDNRTTLHIHMVTEHGAIGEDSGSSPQDKSPLTTGTSSFCSLCGKEYPSQDALRRHIAEEHQPAISTSVPHTPTTTATVTNSTPTTPSEKKVMSMTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVDENTPSSTKQEAHEPANTDDALKPEQLGDLSHRYFTHFTEVCPICNRRFRSIKWLKAHLMGDHGKMGVDKWREMEQQYQATKPGNRGSNAAKNVPNSNLKIPNGFDVPQQIKSAEYAAGLGNQVLSNLLGSSSEDQQLKSYRCSYCNFTTTVLPFLFLHERSHVNAQEASADGEKPLQCPICSQGFHQPEVLHQHLLATHQFPALLSHFQPPVLNNMDPEKLTEVKEKFDQETKDDRAGNSPQVTANQTIPESVRGQRQEDTSTAVQVTPQGVYKCAQCGYATTNLNRIKKHVRKDHKTIGDPTDSVLAELSRTLKDVANRHKMPACYAMPQDMNSNPDKTIMQPFLIEEQEIAQTGEESGTEKRFAQALVYLPVKSRIGNTVTASFTLSPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00966247;
90% Identity: iTF_00024826;
80% Identity: -