Hqua015419.1
Basic Information
- Insect
- Halictus quadricinctus
- Gene Symbol
- -
- Assembly
- GCA_028454245.1
- Location
- CM052111.1:13452285-13462095[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00022 0.018 15.6 0.9 2 21 114 133 113 134 0.93 2 17 0.00022 0.018 15.6 0.2 1 23 137 160 137 160 0.92 3 17 0.0013 0.1 13.2 1.0 1 23 169 192 169 192 0.97 4 17 1.2e-05 0.00095 19.6 2.4 1 23 198 221 198 221 0.97 5 17 3.1e-05 0.0025 18.3 0.5 2 23 228 250 227 250 0.97 6 17 0.098 8 7.2 0.4 1 23 255 277 255 277 0.97 7 17 0.003 0.25 12.0 0.1 2 23 286 306 285 306 0.96 8 17 1.6e-06 0.00013 22.4 0.1 1 23 312 334 312 334 0.96 9 17 2.8e-05 0.0023 18.4 0.1 1 23 340 362 340 362 0.98 10 17 0.01 0.84 10.3 4.2 2 23 474 497 473 497 0.92 11 17 0.00038 0.031 14.8 0.6 1 23 525 548 525 548 0.97 12 17 0.00015 0.012 16.1 2.8 1 23 554 577 554 577 0.96 13 17 0.00063 0.051 14.1 0.1 3 23 585 606 583 606 0.95 14 17 0.00086 0.069 13.7 2.0 1 23 611 633 611 633 0.97 15 17 1.5e-06 0.00012 22.4 0.1 2 23 640 661 639 661 0.97 16 17 1.7e-05 0.0014 19.0 1.3 1 23 667 689 667 689 0.98 17 17 0.00047 0.038 14.5 1.3 1 23 695 717 695 717 0.98
Sequence Information
- Coding Sequence
- ATGTCTGCTGTATTACACTCTGCCGCAGAAACAATAATAATCTCTGACTTTTCATCATTTCCAGGCGTACTCCCAATATCCCTGTACACGTTTACCTCACCGTTAAAGTATTCCAATTCCCCGCTGGACCCTTTAGCAGACGTTCCAAGTATGGACGAGGTCTGCCAGTTCGAAAGTGAGAACACGTGTAGCTTAATGGGCGTCAGGAAATCGGCCGGGCATCGGCCACCGGAAAGACCAACAACGAACTTCGCTAATCATGTTCCGAGTTCCAAAGACGAAGCTCCAAGAAACCAAGTTCTACCGAAGCCGTACAACGGTAAAGGCCGCAGGCCTCTGTACTGTGATCGTTGTGGCAAAGTGTTCTACCGGAAGACGCACATACTGAAGCACATACAGTCGTACAAATATGAGTGCAGCACctgcgacaagccgttccgactgaagagagagttgatcgtgcacgccgaacaagaacacgggcagctagagctgacggaactgtacacgtgtaccgtctgcagctacaagaccccgctcaagagcacgttgaaaagccacattctccggctgcacaccaacgagttcttgtacacctgcaagatctgtcagaagccgttcaagctgaagggcgacctgacacagcacatcaagcatatgcactactccgggtcgaccgtcaagtgttctatctgcaacgcctcgttcaatagtgaaagatccatgcagaatcacatgaggagcgtccacgagaacctttactaccaatgcttacaatgcaggcgatacatggcgacgccggagagcctggagcaacacaagcaatggcacgcggagcaaaagagcgcgagcataacatgcccgaagtgtggcaaagtacttcgaggtcgcacacttgcggctcatttgcgagtgcatactggtcagaaacctttcacctgtccgatctgcgggaaatccttccgcaggctcagccccatggagagacacgttgtcatacataccggcaaaaagccgtacgtctgtgacgtttgcggacaaatgttcgcgcaaaggcccggactgctgtcccacaggaaacgacatcctggaccactaccgcccctgccagtagtatcgattaaaaacatagttagggactttatcgtagagTACAGCTGCGTGAAACACGATTACCGACCGAAGGACCCGCTGAACGATCCTCTGGTGGATCCAAACAGCTCAGACAGATGTCTCAAAATGTGTGCCGAATCATCGCGCGGTTCAAAGGACAGTACCAAACTACCTGTAGAAGCAACAGCGAACCGAAGAGTTCGTTTCTCTTCGCGAAAATCCAAAGCAAAAGACACGAATGACGATTCGACGTCGCCAAATCGAATCGTGCCAAGGTCGTCAAAGATAAGATCCAGCGAACCCTTGAGAtgcgaccactgcggcaaagagtcccttcgcaagagtaacctgatgatgcacctgaaaacgtgcatgcaccgacgCAGGATCTACGATCAGGTgttccgactaaggaacgacctgaagctgcacgtcgacaagaaacgcgggccggtaacgtatccgtgcactatctgcgagtacaagagcacgaacaagtggacgttgaaggaccacatcatccgcaaacacacgagcaactaccactacagctgcaccgtctgccagaagaagttcaagctgaagaacgacctgaagcagcacaccaaccagatgcacaccgatgcaccgcctatcatctgcagcgtttgcgggcaagcttcgaaaaacgttccatctttgaaagcgcacatgagatacaggcactacacgccacccttcaagtgcagcatatgcaaacgttgcctgtccactcagatcagcttggaccagcatttgctttggcaccagaagaaggagaaggtggtgtgccccacctgtgggaagacttttggccagaaaagggatctcgagatccatttaaagatccacgagggcctcagaccgtactcctgtccgttctgcagcaaaaccttccgcaggaaaaacgctcaggagcaacacatgctgatacacaccggcatgagaccgtatacgtgtgacatttgcggacagggcttcactcagaagccgggattgatttgtcatagaaagagacatcctggaccactgccgccattgcccgcgatatccgtgaagaagctcattatggactacactcaaggaTTGCAGACAATACCTAAGGAGTTTCAGGAGAATCCGGATAAAGACGGTAGGGATCGACTTCAGGGGAAAGAGGAACGCTTGGTCTGA
- Protein Sequence
- MSAVLHSAAETIIISDFSSFPGVLPISLYTFTSPLKYSNSPLDPLADVPSMDEVCQFESENTCSLMGVRKSAGHRPPERPTTNFANHVPSSKDEAPRNQVLPKPYNGKGRRPLYCDRCGKVFYRKTHILKHIQSYKYECSTCDKPFRLKRELIVHAEQEHGQLELTELYTCTVCSYKTPLKSTLKSHILRLHTNEFLYTCKICQKPFKLKGDLTQHIKHMHYSGSTVKCSICNASFNSERSMQNHMRSVHENLYYQCLQCRRYMATPESLEQHKQWHAEQKSASITCPKCGKVLRGRTLAAHLRVHTGQKPFTCPICGKSFRRLSPMERHVVIHTGKKPYVCDVCGQMFAQRPGLLSHRKRHPGPLPPLPVVSIKNIVRDFIVEYSCVKHDYRPKDPLNDPLVDPNSSDRCLKMCAESSRGSKDSTKLPVEATANRRVRFSSRKSKAKDTNDDSTSPNRIVPRSSKIRSSEPLRCDHCGKESLRKSNLMMHLKTCMHRRRIYDQVFRLRNDLKLHVDKKRGPVTYPCTICEYKSTNKWTLKDHIIRKHTSNYHYSCTVCQKKFKLKNDLKQHTNQMHTDAPPIICSVCGQASKNVPSLKAHMRYRHYTPPFKCSICKRCLSTQISLDQHLLWHQKKEKVVCPTCGKTFGQKRDLEIHLKIHEGLRPYSCPFCSKTFRRKNAQEQHMLIHTGMRPYTCDICGQGFTQKPGLICHRKRHPGPLPPLPAISVKKLIMDYTQGLQTIPKEFQENPDKDGRDRLQGKEERLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -