Hpyr005673.1
Basic Information
- Insect
- Habrosyne pyritoides
- Gene Symbol
- -
- Assembly
- GCA_907165245.1
- Location
- OU015595.1:12647161-12652242[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.9 2.2e+02 3.0 4.4 3 23 36 56 34 56 0.89 2 14 0.00046 0.034 15.0 3.9 1 23 94 117 94 117 0.98 3 14 4.6e-05 0.0034 18.2 2.2 2 23 120 141 120 141 0.97 4 14 0.00039 0.028 15.3 0.3 1 23 177 199 177 199 0.95 5 14 6 4.5e+02 2.1 2.2 3 23 229 250 228 250 0.95 6 14 0.12 9.2 7.4 0.6 1 12 257 268 257 275 0.82 7 14 1.9e-05 0.0014 19.4 0.1 1 23 285 308 285 308 0.92 8 14 0.00062 0.046 14.6 0.7 1 23 317 340 317 340 0.97 9 14 0.00035 0.026 15.4 0.1 2 23 346 369 345 369 0.97 10 14 0.14 10 7.3 2.2 2 23 376 397 375 397 0.95 11 14 0.00093 0.069 14.1 1.0 1 20 402 421 402 424 0.95 12 14 8.3e-05 0.0061 17.4 2.2 1 23 430 452 430 452 0.97 13 14 4e-05 0.003 18.4 1.6 1 23 458 480 458 480 0.96 14 14 8.6e-06 0.00064 20.5 2.8 1 23 486 509 486 509 0.98
Sequence Information
- Coding Sequence
- ATGGCTTCTCCCTCCCACATGGACCCCGTCGGAGCGCCCTACCCGGACCTAAACAATGTCCCGGGCCTGAAACGTACCACTATTGATTTAATTGGTGGTATATTTTGTAACATTTGCCATTTAACATTTGGGAACAAGAAAGAATATGACTGTCATTACTTGAAGCACAGTTCAGGCAATACGGAGATCATTTACACATGTGTTGCATGCCATAAGGAGATAGCAGGGTACCCCAGCTTCCGTGGGCACTGCTACCTCAATCATGTTGCAAAAAATAAATACAAATGCGTACACTGTGACAGGACTTATTCAAAATGTTCAGTACTTCAAAGCCATATTGATACCGTTCATACAAACAGATGCAATAAATGCAAGAAACAATTCTCATCAAAAACCGAACTGCAAGTACATCTATTACTTCACAAGAATGAAAAGAACTCTCCGCCATACGAATGTAACCTGTGCTGCAAGCATATTGACAGCATGGACATGTGTGAACTGCATATCGACGAGCACTGCACCATCACATACCTGTGCCCCATATGTACCATGTCATTCACAAATAAAAATGATGCTACATCACATCTTTCCATTCATTTTGATGATGTACTCACCGACTACGATTTCATTGAGCCGAAGATAGTGAAAGAAGACTGCTCCATTGACATACTTGGTGGCATACTATGCTGCTACTGCGACAATTTGTTCAAGAACCGACTAGAATTCGATGCCCACTTTTCAACTGAACACTACGGCAAGGAAATTGTGTACTCATGTAATATTTGCGGGAAGAAATACGAAAAATATTTGATGTTCGGCAACCACTGCTACTTTCACATCGCTAAAGATCGTTTTGAATGTGATGAATGTGACAAGACCTTCCCCCGTCTCTCGCTGCTGGTCGTCCACACGGAGGCCTTCCACTCTGGCAGTCCTGCAGACAAGCCTTTCACCTGCGTCCAGTGTGACCATGGGTTCAAGACAGCACCTCGCTTGCGTGAACATCTCCGCATTGTTCATGATCTTCATTCCATCAAGTGCCCGGAGTTCGGGTGTGAGATGACATTCGAATCACCGAAAGATCTGATCCTCCACCAGAGGAATCACAAAATTGTCGACAACATCTCATGTCGTCATTGCAGTCTGCCGTTCACCACGCTATCAGCATGCGAGAGACACCTCGATGTGCACAGGAAATCAATATACATATGCCCAATTTGCAACAAGGAGTACAGAGAGAAATTCACCTTGCTCAAGCACATTCCACACCATTTTGAATCAGTGCTACACATTTGTAAAATCTGCGGCAAAGCTTACAACACACGGTCTCGTCTAGTCCAACATTCCAAGACACATTCGGATTTGAGGAATCATATATGCAATCTCTGTGGCAAGGGCTTCATGAAACCTCACGAGTTGCAACAGCATCTGAATGTTCATACAGGCTTGAAGCCTTACAAGTGCACGCATTGCCCGAAGACATTCGCCAGCTACCCAAATTGGTCCAAACATTTGCGACGGATGCATAACATTGATAAGAAAACGATAAAAACACAACAGAATCATAGCGATTTGAAGAAGGAGAATGTTTTGAACGATACATTGCCTGATATGAAAATGATTACAAAGACACATAATCTTGTCGATGTTAATAACGATTTTGTAAATGTTTTAAAAAGTAATTTGCCGGATAATAATGTTGTTAATTGTGATGTCGCATCGATCATAGAGTCTGGCTTCGATTCGATGAGCTCTGATATGTCTATGGGTACATATCGTTTCGTTGAATCCGACGAGAGCACGATGGACGGCATCGACCCGATCGTTATTCAGAAAGAGTGGCAGATGTTAAACGAAAGCGTTAACTGTGCAGCTAACAATATTCTCGAATTGCCGAATTTGATGCCAATCATCAATACGACGTTTGGACCTCTTGACACGCCACAAAATACATCGATTCTGGACACAACGCCGTCCTTCCAGACAGTTGGTTACCCTCCAGAATACGGACCAGACTTCATAAACAGAGGTATCGAAACTTCCTCATTCAATGGGGACTTGATCGACCTCGATGACCACATTCTACCCCATATCGATCCGCTACTTACCATAAGAAATGAAGAAACGTCGACAAAAATGTACGTAAACACATTGCATAACGTCAATTTCGAAAACTACGACCACAATGTCGTAACTAACACATACGAAACGCAAAATACTTGGGAACCGCCTATTATAACTAAGGTTTACCAGAATTACACGTACCACGAGGAACTAGCAGAAGTTAATAGATTATCCATTATGAATACAGATATTTTTTAG
- Protein Sequence
- MASPSHMDPVGAPYPDLNNVPGLKRTTIDLIGGIFCNICHLTFGNKKEYDCHYLKHSSGNTEIIYTCVACHKEIAGYPSFRGHCYLNHVAKNKYKCVHCDRTYSKCSVLQSHIDTVHTNRCNKCKKQFSSKTELQVHLLLHKNEKNSPPYECNLCCKHIDSMDMCELHIDEHCTITYLCPICTMSFTNKNDATSHLSIHFDDVLTDYDFIEPKIVKEDCSIDILGGILCCYCDNLFKNRLEFDAHFSTEHYGKEIVYSCNICGKKYEKYLMFGNHCYFHIAKDRFECDECDKTFPRLSLLVVHTEAFHSGSPADKPFTCVQCDHGFKTAPRLREHLRIVHDLHSIKCPEFGCEMTFESPKDLILHQRNHKIVDNISCRHCSLPFTTLSACERHLDVHRKSIYICPICNKEYREKFTLLKHIPHHFESVLHICKICGKAYNTRSRLVQHSKTHSDLRNHICNLCGKGFMKPHELQQHLNVHTGLKPYKCTHCPKTFASYPNWSKHLRRMHNIDKKTIKTQQNHSDLKKENVLNDTLPDMKMITKTHNLVDVNNDFVNVLKSNLPDNNVVNCDVASIIESGFDSMSSDMSMGTYRFVESDESTMDGIDPIVIQKEWQMLNESVNCAANNILELPNLMPIINTTFGPLDTPQNTSILDTTPSFQTVGYPPEYGPDFINRGIETSSFNGDLIDLDDHILPHIDPLLTIRNEETSTKMYVNTLHNVNFENYDHNVVTNTYETQNTWEPPIITKVYQNYTYHEELAEVNRLSIMNTDIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01416122;
- 90% Identity
- -
- 80% Identity
- -