Hpyr004393.1
Basic Information
- Insect
- Habrosyne pyritoides
- Gene Symbol
- -
- Assembly
- GCA_907165245.1
- Location
- OU015602.1:1832071-1847245[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.012 0.88 10.6 3.0 1 23 118 140 118 140 0.96 2 12 8e-05 0.0059 17.4 0.9 2 23 148 169 147 169 0.94 3 12 0.05 3.7 8.6 1.4 1 23 173 195 173 195 0.97 4 12 0.00053 0.039 14.8 2.0 1 23 200 223 200 223 0.98 5 12 0.016 1.2 10.2 0.1 1 23 227 250 227 250 0.94 6 12 0.0091 0.67 10.9 0.1 2 21 268 287 268 292 0.92 7 12 3.7e-05 0.0027 18.5 1.6 3 23 302 323 302 323 0.98 8 12 2 1.4e+02 3.6 0.4 2 23 343 365 343 365 0.95 9 12 3.6e-06 0.00026 21.7 0.5 1 23 376 398 376 398 0.99 10 12 2.9e-06 0.00022 21.9 1.7 1 23 404 426 404 426 0.99 11 12 1.2 90 4.2 5.4 1 21 432 452 432 454 0.93 12 12 3.2e-05 0.0024 18.7 0.2 1 23 460 483 460 483 0.98
Sequence Information
- Coding Sequence
- ATGTCGCCAAGCACCTGTTGGTGTGCTCTGATAGCTGCACTTGAGAGCCAGTTCCCTTCTAGAGACCTGGGTTCGATTCCTAGTTCGGGCAAGGAGTCAACAAAACACCAGGAAATTAACGAAACATCATCAGCAACACTAGTAATAAGCAAACGCAAACGAGGCCGGCCAAAGAAGACTGATAAGCCAGTAGAATCTAAAGTGAAGATCCGGAGGACTAAAAACACTGGAGGCGTTGTATCTGATGAAATTGATTTGGAGGAATATGTCACAGTTATTAAGTTATCGTTAAAAGAACAGATGGAGGAGATCACAAAGCGCAAAGACTCGTCGAACTACTTGAACACACCCTTCCAATGCAACCTTTGCTACAAGGGGTTCATCGACACCCACGCGTGGAAGCACCACGTCGGGAAACATGACCTGAGCGCGGGTGACATCGAATGTCCTGTATGCAAGTTCAGGTTCAAAACGAAACGTACCCTACAGAAACACGCCGCAAACCACGAGAAGAAATATGCTTGCAAGTCATGCTCGTATGTCTCCAAAACTACAACTCAAGCAAAACAACATCAGAGGTGGCACAAAGGTGTTACGTACAAATGTCAGCATTGTGATGAAGTCTCAACCAAGTGGACGTCGTACCTGAGCCACGTCCGCATCAAGCACCCGTCGGAGTTCATCTGCGGCGCGTGCGGCTACTCGTTCGTGAGCCGCCTCGGGCTCGCCATGCACCGCACCATGATGCACAAGGACCTGCTCGAAAAGACAGATGACGAAACGGAAAAAGAACCGGGACCATATTGCGAAGAATGCGACGTCAAGTTCGTATCAGTGGAGGCTTGGAAGCGGCACATGGTGACGTCAATCAAACACATACAGAGCACGGACTTTAACAAAGGTTGCCGCGTGTGCGGGGAGATGTTCAAGAACAGCGAGGAGCTGCGCGTCCACCACCGCAAGGAACACGCCAAGAAGCGCCCCAAGAACTACGGCAAGAAGCCCTCCAACACCGCCTGGCCCGCCAAGTGCGACCACTGTGCAGAGGAGATCGGCAGCGCGCGCGAGTACTGGACGCACTTCCGCCGCGCGCACCCCGACAAGGACTACCCCATACAGAAGAACTACGTGTGTGACATCTGCGGGAAGAGCTTCCGGGGCAACGCGTTCCTCGTGTACCACAAGCGGACCCACTTCACGGAGCGCGCGTACAAGTGCGAGCAGTGCCCGAAGGCCTTCTTCAACCGCACCAACCTGCAGATGCACGAGAAGACGCACTCCGAGACGCGCCCGTACCCCTGCTCCGTCTGTTTCAAGGCCTTCAAGTGCAAAGGCGCGTTGGACAGGCATTTTAGGTGTCACACAGGCGTCAAACCATACGAATGCGAGGTATGCGGCAAAGCCTTCGGTCAGTCGAACAGTCGGAAACTCCACGTTCGGACGGTGCATCTCAAGCAACCGGCGCCGTACATCAGCCGCAGCAGACTTGAGAGGCGAAACAAATCGCACTCACCGAAAGAACTGCCAACACATCAGTTTATATATCAATGA
- Protein Sequence
- MSPSTCWCALIAALESQFPSRDLGSIPSSGKESTKHQEINETSSATLVISKRKRGRPKKTDKPVESKVKIRRTKNTGGVVSDEIDLEEYVTVIKLSLKEQMEEITKRKDSSNYLNTPFQCNLCYKGFIDTHAWKHHVGKHDLSAGDIECPVCKFRFKTKRTLQKHAANHEKKYACKSCSYVSKTTTQAKQHQRWHKGVTYKCQHCDEVSTKWTSYLSHVRIKHPSEFICGACGYSFVSRLGLAMHRTMMHKDLLEKTDDETEKEPGPYCEECDVKFVSVEAWKRHMVTSIKHIQSTDFNKGCRVCGEMFKNSEELRVHHRKEHAKKRPKNYGKKPSNTAWPAKCDHCAEEIGSAREYWTHFRRAHPDKDYPIQKNYVCDICGKSFRGNAFLVYHKRTHFTERAYKCEQCPKAFFNRTNLQMHEKTHSETRPYPCSVCFKAFKCKGALDRHFRCHTGVKPYECEVCGKAFGQSNSRKLHVRTVHLKQPAPYISRSRLERRNKSHSPKELPTHQFIYQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -